Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq32 125 7e-24 seq175 113 4e-20 seq199 107 2e-18 seq64 107 2e-18 seq13 100 3e-16 >seq32 Length=184707 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||| || || || ||||| |||| | Sbjct 81339 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 81280 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||| ||||| || || || Sbjct 81279 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 81220 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| ||||| ||| |||||| | | ||| || Sbjct 81219 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGACTCCAC 81161 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| || || || || ||||| || ||||||||||| Sbjct 81160 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 81113 >seq175 Length=62467 Score = 113 bits (124), Expect = 4e-20 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| || || ||| || || ||||| || |||||| ||||| Sbjct 37697 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 37756 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || |||||||||||||| |||||| ||||| | || Sbjct 37757 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCA 37816 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || ||||| |||||||| || || ||| Sbjct 37817 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 37876 Query 127106 ATCTGCATGGCTTATT 127121 ||| |||| |||| Sbjct 37877 --CTGGATGGTGTATT 37890 >seq199 Length=55906 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||||| | |||||||| || ||||||||||| ||| | Sbjct 32608 CCACCTCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 32667 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || || |||| | ||||||||| || || || Sbjct 32668 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 32727 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || || || ||| | | |||| || |||| | |||||| Sbjct 32728 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 32787 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||||| |||| ||| || || || |||||||| Sbjct 32788 TCCAATGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||||||||| ||| | || || ||| || ||||| || ||| Sbjct 32866 GTGGATTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCA 32925 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||||||||||||||| ||||| || || ||||||||| || ||| |||| Sbjct 32926 GCGAAAATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTCGACTTG 32985 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || || ||||||| ||| Sbjct 32986 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTC 33045 Query 127097 TTTACAA 127103 || |||| Sbjct 33046 TTGACAA 33052 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 126911 TGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970 |||| || ||||| || || |||||||| || | ||||| ||| || ||||| Sbjct 33161 TGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGC 33220 Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 ||||||||| |||| | |||||||| ||||| || || |||||||||||| || ||| Sbjct 33221 TTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCCTGAATCTTC 33280 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| | || | ||||| | |||||| |||| || | || |||||||| Sbjct 33281 GACTTGACATTGTCAATAGTGTCAGAGGACTCGACCTCGAGAGTAATGGTCTTGCCGGTG 33340 Query 127091 AGAGTTTTTACAAAAATCTGCATGG 127115 || || || || || || ||||||| Sbjct 33341 AGGGTCTTGACGAAGATTTGCATGG 33365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 || || || || ||||| |||| || |||||| || || ||||| ||||| || | Sbjct 32416 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 32475 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042 || | ||| ||||| |||||||| ||||||||||||||| || || |||| | Sbjct 32476 ATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGATTTGACATTG 32535 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 |||| ||| || | | || ||||| | || | || || || |||| || || ||| Sbjct 32536 TCGATGGTATCAGAAGATTCCACTTCCAAAGTAATAGTCTTTCCAGTCAAGGTCTTGACA 32595 Query 127103 AAAATCTGCAT 127113 ||||| ||||| Sbjct 32596 AAAATTTGCAT 32606 >seq64 Length=130623 Score = 107 bits (118), Expect = 2e-18 Identities = 1097/1748 (63%), Gaps = 68/1748 (4%) Strand=Plus/Minus Query 145852 TTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTAT--CATGC 145909 || || || ||| ||| || || || | | | || ||||||||||| | || |||| Sbjct 44536 TTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAACATG- 44478 Query 145910 ACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGT 145969 || ||| ||| ||||| |||| || ||||| |||||| || |||||| | | Sbjct 44477 ACGCTGAGA-AATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGTATATTGG 44419 Query 145970 CAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAA 146029 |||||||| | || || || ||||| | || ||| || | || | | Sbjct 44418 GGATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAGA 44359 Query 146030 TGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGA 146089 || || ||||| |||||| ||| | ||||||| ||||| || || || || | Sbjct 44358 GACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCA 44299 Query 146090 GAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTA 146149 || || | | | || | |||| ||| | ||||| || |||| |||||||| || | Sbjct 44298 AGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAA 44239 Query 146150 TCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-T 146208 | |||| || | ||||| |||||| || | |||||| ||||| | | ||||| | Sbjct 44238 TTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCT 44179 Query 146209 CTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTG 146268 | |||| ||| ||| || ||| ||| | |||||| | | | || | || ||| Sbjct 44178 CCTTGA-TCTGCTCCTTCAGATTGTCCCACTCCCACAACTCA---GAAGGCTTGACATTC 44123 Query 146269 TAGTTGTCGTAATGCATAGTGCCG-CGGAACAGGGGGCTATTCTCGTACGATTCATAAGG 146327 | ||||| | || | | | || | || ||| | || | | | || || Sbjct 44122 CACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCC-CTTGAAGGTAGAGTAGGG 44064 Query 146328 ACCGTCGATCTT-GGCCAGTTCGCAGCTAG-CTTCCAGAGCCGAAAAGTATATGGTCTCC 146385 || | | |||| |||||| || || || || ||| || | ||| |||||||| Sbjct 44063 GCCTT-GCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCTCG 44006 Query 146386 GCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCAC 146444 |||| | ||||| |||| | |||||| ||| |||| || ||| | Sbjct 44005 AAGATCTGCTTGTTGA-GCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAGAGCAAG 43947 Query 146445 AAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT 146504 ||| |||||||| |||||||| | || ||||| | ||| || ||| | |||| ||||| Sbjct 43946 AAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGTT 43887 Query 146505 CGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGAC 146564 ||| || || |||| || |||||| || |||||||||||||| ||||| ||||| Sbjct 43886 GCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACGAC 43827 Query 146565 AATTTTCGTCAAACGATTCAG---CAGGACATAGTCAAATGTTTTAGTTTTAACGTTGAC 146621 | || || | | || | ||| | || | | || || || || ||| Sbjct 43826 CACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGT-AGCGGCCTTCTTTGTA--GTCGAC 43770 Query 146622 GCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATA 146681 | | | ||| | |||||||||||| || || ||| ||| || | | || || Sbjct 43769 GAAGGCAGGAAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTA 43710 Query 146682 CTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACT 146741 || | ||||| | ||| |||||| || ||| | |||| || || ||||| || Sbjct 43709 CTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCT 43650 Query 146742 AAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTC 146801 ||||||||| |||||||| ||||| | || || |||||| | || ||| Sbjct 43649 CTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTC 43590 Query 146802 GACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCTTT 146859 || |||| | | || | | ||||| | | | ||||| || || | | Sbjct 43589 GAGGATGGA--GTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGC 43532 Query 146860 TCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGAT 146917 || || |||||||| | ||||| || | || || || ||||| || Sbjct 43531 TCATACTTCTCGTAGAGAGCCTCAAACTCCTCG--CCATAGCAATCAGCCAGGCCAGGGC 43474 Query 146918 ACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAAT 146977 ||| |||||||| | || | ||| ||| ||||| | ||||| | ||| || | || Sbjct 43473 ACTCGTTGGGACACATGAGAGTCCAATCTCCATTCTTTTCGACGCGCTTCATGAAGAGAT 43414 Query 146978 CGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGC---CTTGGCGTCCTCGGAGCCCAT-G 147033 | || ||||| || | || | | |||||||| || | |||| | |||| | Sbjct 43413 CTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCTTG----CCATGG 43358 Query 147034 TTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCG 147093 || || ||| | || | || | | || | ||||||||||| | ||| ||| Sbjct 43357 TTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCA 43298 Query 147094 AGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACT 147150 | ||| || |||| || |||||||| || |||| | | |||| |||||||| Sbjct 43297 AATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACA 43238 Query 147151 CGTAACATGGACACGAGGCCGCCGGATTT---TGTGGTGCCG---TTGTA------TTGA 147198 || | ||||| | || |||| |||| | |||||||| |||| | Sbjct 43237 CGAAGCATGGGAATGATGCCGTTGGATGTACCATTGGTGCCGGCAATGTAAGAGCCGGTA 43178 Query 147199 GCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGA- 147257 || | || || || ||| ||| |||| ||| || ||| || || |||| || | Sbjct 43177 GCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAG 43118 Query 147258 CTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACA 147317 || || | || | |||||| ||||| |||||||| ||||| ||| || ||||| Sbjct 43117 GTCTTG-AGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGACTAGAAAACA 43059 Query 147318 CGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAA 147377 ||| ||| || | || || || || || || || |||||| ||||| Sbjct 43058 AGAAGACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAA 42999 Query 147378 ---CGTGCCCAGACTCATCAATTGATACGTTTC--AATGGCGCTCATAACGTCATCGCCG 147432 | || | || ||| | || || || || || |||||| || || || || Sbjct 42998 GAGCTTG-CTGGA--CATGAGGTGGTAGGTCTCCAAAACGCGCTC--AATGTTGTCTCCC 42944 Query 147433 TGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTG 147492 ||| | | || |||||||| ||||||||| ||||| || | ||| | | ||| Sbjct 42943 CAAATACCGACCGCAACGCGCATAGTCATGTGCTGAGGTCGCTCGACGATCTTGCCGTTG 42884 Query 147493 ACTTTTAATAGATATCCATTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTC 147551 | ||| | |||||| || || ||||| || || |||||||| | |||| | |||| Sbjct 42883 AGTTTGAGAAGATAT-GATCTCTCTAGAGTCTTAAAGCCAAAGTATTGATAGTTGAAGTC 42825 Query 147552 CCTGTTGT 147559 |||| || Sbjct 42824 TCTGTCGT 42817 >seq13 Length=282089 Score = 100 bits (110), Expect = 3e-16 Identities = 298/454 (66%), Gaps = 17/454 (4%) Strand=Plus/Plus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||| | || ||| | |||||||| ||| |||||| |||||||| || |||||| Sbjct 96903 GCCCAGCGCTTGGTGGCTTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCC 96962 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 ||||||| | | || | || | |||||||||||||| || || || || Sbjct 96963 TCGATATTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAATGAACTT 97022 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCT---ACTA-CAACACTAG 47308 ||||| | || || || ||||||| ||||||| ||||| | ||| || | || Sbjct 97023 ATCTCTCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCTTAAG 97082 Query 47309 AGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCC 47366 ||| | | ||| | | ||| || || | |||| || || | Sbjct 97083 CACCGAGCCAGCAAGAA--AATTATCCAG-------GATATCATCACCGACGCTGTTGGG 97133 Query 47367 ATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAG 47426 |||||| |||||||| ||||||||||||| || | | || |||||||| Sbjct 97134 ATTGAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACA 97193 Query 47427 ATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC 47486 |||||| | || || |||||||||||||| ||| | | ||| || ||| | Sbjct 97194 CTGATGAAGCAATATATTGAATTTGTCGCCGATCGCTTATTGGTTGCTCTTG-GTAACGA 97252 Query 47487 AA-GATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAA 47545 || | | ||| | |||| || || ||||| || ||| | |||||||| | | ||||| Sbjct 97253 AAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAA 97312 Query 47546 GACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579 ||| ||||| ||||||||||| || || |||||| Sbjct 97313 GACGAACTTCTTCGAGAAGCGAGTTGGAGAATAT 97346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494452064320