Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq64 304 2e-77 seq82 87.8 2e-12 >seq64 Length=130623 Score = 304 bits (336), Expect = 2e-77 Identities = 1146/1772 (65%), Gaps = 33/1772 (2%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 44661 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 44602 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 44601 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 44542 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||| | ||||| || ||||| ||| || ||||| || ||||| | || | Sbjct 44541 GGACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAA 44482 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 ||| | || ||||| || || ||||||| ||| || || | || |||| Sbjct 44481 CATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGTATAT 44422 Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTG 115822 ||| || || || || ||| || | | |||| | | |||||| | | | Sbjct 44421 TGGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAG 44365 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCAC 115882 |||||||||| || | |||||||| | ||| ||||| || || |||| Sbjct 44364 ACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 44305 Query 115883 CCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 | || | | || | | | || ||||||| ||||||||||||||||||||||||||||| Sbjct 44304 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 44245 Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002 ||| ||||| | |||||||| ||||||||||| || | || | |||||| | || Sbjct 44244 CCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 44185 Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 116060 | | || | || | ||||| || |||||| || | | || | || | Sbjct 44184 CGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 44127 Query 116061 CTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 116120 | |||||| || || || || ||||||| || || || || |||| || || || Sbjct 44126 ATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 44067 Query 116121 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTCT 116179 ||||| | | | |||| || || | || ||||| ||||| || || |||| Sbjct 44066 GGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCT 44008 Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA-A 116238 | || || | || | | ||||||| || || || | | || || | | Sbjct 44007 CGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCA 43949 Query 116239 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298 | ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 43948 AGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 43889 Query 116299 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 116358 || ||||| ||| | ||| ||| || ||| || | | | || || || | | Sbjct 43888 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACG 43829 Query 116359 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GAC 116417 || || | |||| || || ||||| | | | || | | || ||| | | | ||| Sbjct 43828 ACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCGAC 43770 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | ||||||||| | || |||| || || |||| |||||| || ||| Sbjct 43769 GAAGGCAGGAAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTA 43710 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537 ||| || || ||||| |||| || || || |||||| |||| |||||| || || Sbjct 43709 CTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCT 43650 Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTT 116597 |||| |||| || ||||||||||| |||||| | || | ||||| || || ||||||| Sbjct 43649 CTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTC 43590 Query 116598 GAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCT 116656 ||| || | | ||| | | || | ||| | | ||| | | | || ||||| || Sbjct 43589 GAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT 43531 Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCC 116715 | ||||| |||||| ||||||||||| || ||| ||| || | || || || | Sbjct 43530 CATACTTCTCGTAGAGAGCCTCAAACTCCTC-GCCATAGCAATCAGCCAGGCCAGGGCAC 43472 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | | ||||| | ||||| ||| | ||| || || || |||||||||||||| ||| Sbjct 43471 TCGTTGGGACACATGAGAGTCCAATCTCCATTCTTTTCGACGCGCTTCATGAAGAGATCT 43412 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835 |||||||| || || ||||||||| ||| || |||||| | || || || Sbjct 43411 GGGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCTTGCCATGGTTCTTT 43352 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-A 116894 ||||| || | |||||| | | || |||||||| || || ||||| | || | || | Sbjct 43351 CGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCA 43292 Query 116895 CC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAG 116951 || | || | | || |||||| || || || || || ||| || || ||||| Sbjct 43291 CCAGGTCGCTTGTTG-CCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACACGAAG 43233 Query 116952 CATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCT 117011 ||| |||||||| || | ||| ||||| || || ||| ||| | | || | Sbjct 43232 CATGGGAATGATGCCGTTGGATGTACCATTGGTGCCGGCAATGTAAGAGCCGGTAGCACG 43173 Query 117012 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGT 117071 || ||||| || || || ||||| || ||| ||| ||||| || || | | Sbjct 43172 GATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTT 43113 Query 117072 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 117131 |||| || ||||||| || || || |||| |||| | ||| || || || || Sbjct 43112 GAGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGACTAGAAAACAAGAAGA 43053 Query 117132 CATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA 117189 || || | || || ||||| ||||||||||| || |||| |||||| ||| | | Sbjct 43052 CA--GCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGA 42997 Query 117190 CCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATAC 117247 |||| |||||| | |||||||||||| || ||||| || || ||||| Sbjct 42996 GCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTCCCCAAATAC 42937 Query 117248 CGATTGAGACCCGCATAAACATGTATTGGGGT 117279 ||| | || |||||| ||||| || ||| Sbjct 42936 CGACCGCAACGCGCATAGTCATGTGCTGAGGT 42905 >seq82 Length=114185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG----TTGATTTTCACGGGCAA 12930 ||| | ||| || | |||||| ||||||| ||| | || ||| ||| |||| Sbjct 53396 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAGGGCGACTTGGCTTT----GGCAG 53341 Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990 | |||| ||||| |||| ||||||||| ||||| ||||| || || | || || Sbjct 53340 CACTGAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 53282 Query 12991 CGGCGGAACAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 13049 | | | |||| | || |||||| ||| | |||||| || | |||||| || || || Sbjct 53281 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 53222 Query 13050 GTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 13105 ||||||||||| ||||| ||| | ||||| |||| | |||| | | ||||||| Sbjct 53221 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACC 53166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499009678880