Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq64 132 8e-26 seq13 107 3e-18 >seq64 Length=130623 Score = 132 bits (146), Expect = 8e-26 Identities = 443/676 (66%), Gaps = 10/676 (1%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || |||||||| |||| || || | |||| ||||| | | || ||||||||||| | Sbjct 44668 TCTACGGTGAACTGGATGG-GTGCAGCAGCAG-CCTGCGTGCGCAAGTAGTACATGCCCG 44611 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || ||| || ||| || | |||||| || | | |||| || | || | Sbjct 44610 TCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGAT 44551 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | |||||| | ||| || |||||| |||||||| |||||| || ||||| |||||| Sbjct 44550 CCTTCATGTGGACGTTGAGCGACTGGGACTGGTCGAT-AAAGGCACCGCGATCGGCGGCC 44492 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || | ||||| ||| ||||||||||| || |||||| | | | || ||| Sbjct 44491 ATCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCG 44432 Query 204080 TGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 || | || | | || ||| || || ||||| ||||| || | | || || | Sbjct 44431 GCGGGTATAT-TGGGGATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCAT 44373 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 | || ||| | |||| || || ||| | || |||||||| || ||| Sbjct 44372 GGCATCAGACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTG 44313 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || || | || || | || | | | |||| ||| |||| || || ||| Sbjct 44312 GAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTC 44253 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||||| || | ||| || | |||| ||| |||||||||||||| || |||| ||||| Sbjct 44252 ATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTT 44193 Query 204319 GCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACTGG 204377 ||| | ||||| | | || |||| ||||||| | ||| || || | || | Sbjct 44192 GCGAATACCGTGCTCCTTGA-TCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAAG 44134 Query 204378 GTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACG 204437 | || || |||||||||||| |||| || |||| | | || ||||||| | | Sbjct 44133 GCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGG 44074 Query 204438 TCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACA 204497 | | || || | ||||| ||||||| ||||| | || ||| | ||| | Sbjct 44073 TAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAGA 44014 Query 204498 TGGTCTCAAAGATCTG 204513 ||||||| |||||||| Sbjct 44013 TGGTCTCGAAGATCTG 43998 Score = 102 bits (112), Expect = 1e-16 Identities = 414/638 (65%), Gaps = 16/638 (3%) Strand=Plus/Minus Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCT 205166 ||| || || || | ||||||||||| |||| ||| |||| || | || || | || Sbjct 43484 CAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCA-ATCTCCATTCTTTTCGACGCGCT 43426 Query 205167 CCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGT 205226 ||| || || || ||||||||| | || ||||| || || | || | || | Sbjct 43425 TCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCT 43366 Query 205227 CTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAAC 205285 ||| |||||||| ||| || || ||| | | | ||| |||||||| ||||| | Sbjct 43365 TGCCATGGTTCTTTCGCAAATCAAG-AAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGG 43307 Query 205286 CACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCAC---CATGCGAGTCATC 205342 | | ||| | ||| || || | |||||| || |||||||| || || ||| | Sbjct 43306 TAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTT- 43248 Query 205343 GCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG 205402 |||||| || || ||||| || | | ||||||| || || || |||| | ||| Sbjct 43247 --GTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCATTGGTGCCGGCAATG 43190 Query 205403 GCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCG 205462 ||||| ||| | | | | || | | ||| || || |||| ||||| | Sbjct 43189 TAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAG 43130 Query 205463 ATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGT 205521 ||| ||| || ||||| |||||| |||||| || | ||| || ||| || ||| Sbjct 43129 ATCATGGCACAGGTCTTG-AGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCA-TGT 43072 Query 205522 C-ACCAGATAGCACGAAGCCAGCTTGGCA-AAGTTGGTGCCCGCGTGGAAGAGCGTGGGG 205579 | || ||| | || |||| |||| || || | ||| || |||| |||||| || || Sbjct 43071 CGACTAGAAAACAAGAAGACAGC-TGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGT 43013 Query 205580 CTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGA 205639 ||||||| ||||| |||| | || ||||||||||| |||| ||| | Sbjct 43012 GAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATG 42953 Query 205640 TCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACC 205699 | | || |||||| | || | | ||| | ||| ||||||| ||| | | | Sbjct 42952 TTGTCTCCCCAAATACCGACCGCAACGCGCATAGTCATGTGCTGAGGTCGCTCGACGATC 42893 Query 205700 CTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGT 205737 | |||| | ||||| ||||| | ||||||||| || Sbjct 42892 TTGCCGTTGAGTTTGAGAAGATATGATCTCTCTAGAGT 42855 >seq13 Length=282089 Score = 107 bits (118), Expect = 3e-18 Identities = 288/429 (67%), Gaps = 21/429 (5%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||| |||||||| ||| ||| || |||||||| |||| ||||| Sbjct 97331 CTTCTCGAAGAAGTTCGTCTTGCCACCCAAGGAAATGTTCTCCATGAAATCGAAGGGGTT 97272 Query 159709 CT---TCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAA 159765 | || ||| | |||| | || ||||| ||| || | || || ||||| Sbjct 97271 GGCGGTTTTGT-ATACCTTTTCGTTA--CCAAGAGCAACCAATAAGCGATCGGCGACAAA 97215 Query 159766 TTCGATGTA--GCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823 ||| || || ||| || || | | ||| || || || || | || || || Sbjct 97214 TTCAATATATTGCTTCATCAGTG-TGGC-GTTCATGCCTAGGAGAGCACACGGCAGAGCC 97157 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG 159883 || | || |||||| | ||||||| | || || ||||| | || | | || | || Sbjct 97156 TCGGTCAAAAACTCTTGCTCAATCCCAACAGCGTCGGTGATGATATCCTGGATAATTTTC 97097 Query 159884 TACCCCGGCT---TGCCCAAAATGTG-GTCCTTAAACAGGAGGCACGCAAAGTCGCAGTG 159939 | | |||| ||| || ||| | || | ||||| || |||||||| ||| Sbjct 97096 TTGCT-GGCTCGGTGCTTAAGATGCGAGTGC---AACAGA---CATGCAAAGTCTGTGTG 97044 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || ||||| || |||||||| | || || || | | ||||||| ||||| | ||||| Sbjct 97043 CAAACCCTCATCACGAGAGATAAGTTCATTAGAGAAGGTGAGGCCGGGCATCAGACCACG 96984 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 | |||||||| || || | ||||| |||||||| || ||||| ||||||||||| || Sbjct 96983 CTTCTTGAGCCAGAATATCGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCCACGGCAGC 96924 Query 160060 AAACGCCAC 160068 || ||||| Sbjct 96923 GAAAGCCAC 96915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795144584678080