Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq13 147 2e-30 seq32 134 1e-26 seq175 109 5e-19 seq199 93.3 4e-14 >seq13 Length=282089 Score = 147 bits (162), Expect = 2e-30 Identities = 349/518 (67%), Gaps = 12/518 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || |||||||| || || ||||| || || || || || || | Sbjct 97364 CATAACTCCAGCCTTCTGATATTCTCCAACTCGCTTCTCGAAGAAGTTCGTCTTGCCACC 97305 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 |||||||||| | ||| ||||| ||||||||||| || ||||| ||| || | Sbjct 97304 CAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACC 97245 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCA 132767 | || | || | | | ||||| || || || || |||||| ||| || | || Sbjct 97244 AAGAG--CAACCAATAAGCGATCGGCGACAAATTCAATATATTGCTTCATCAGTGTGGCG 97187 Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 | | | || || ||| |||| |||||| || ||||| | ||| |||||| || | | Sbjct 97186 TTCATG-CCTAGGAGA-GCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATCCCAA 97129 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | |||||||||| ||| ||| | | ||| | || ||| | |||| | Sbjct 97128 CAGCGTCGGTGATGATATCCTGGATAATTTTCTTGCTGGCTCGGTGCTTAAGATGCGAGT 97069 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 || || || |||||||| ||||| ||||| || | || || ||||| || || Sbjct 97068 GCAACAGACATGCAAAGTCTGTGTGCAAACCCTCATCACGAGAGATAAGTTCATTAGAGA 97009 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | || | ||||||||| || || || || |||||||| ||||| | ||| || || Sbjct 97008 AGGTGAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAATATCGAGGCAAAGGCACCGC 96949 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 ||||||| |||||| ||||| ||||||||||||| ||||| | |||| ||| || | Sbjct 96948 TGAAGAAGATGCCCTCCACGGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCT 96889 Query 133067 TG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 || ||| ||||| || | ||||| || || |||| Sbjct 96888 TGTCCTG--AATCCAACGAATGGCCCAGTCTGCTTTTT 96853 Score = 113 bits (124), Expect = 5e-20 Identities = 191/276 (69%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||| | ||||| ||| || || |||| ||||| | |||||||| ||| || || Sbjct 96731 GTAGCTATCGATCAGGAGAGAGTATGTTTCAGAGTGGATATTCTCCATCATGATCTGGAA 96672 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || ||||| ||||| || || ||||||||| | || || Sbjct 96671 TCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTT 96612 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||| ||||| |||||||| || || || || |||| | ||| |||||| | Sbjct 96611 TTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATGAAGTATTT 96552 Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||| ||| || | ||| ||| || |||||||||||| || | ||| || Sbjct 96551 CTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCTATCTCTTC 96492 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || || ||||| || |||||||| Sbjct 96491 GGCCGTCCAGAAAGAGGCTTCGGCCTTCTTGTACAT 96456 >seq32 Length=184707 Score = 134 bits (148), Expect = 1e-26 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || || |||||| | || || ||| | Sbjct 81110 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 81169 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 81170 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 81228 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || || || | || || || ||||| || || | |||||||| | |||||| Sbjct 81229 CCAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 81288 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || ||||| ||||||||||| Sbjct 81289 CAACATCCAGAAGGAGAGC-ACCCTGCACTTGGTGCTGCG 81327 >seq175 Length=62467 Score = 109 bits (120), Expect = 5e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGT 38311 ||||| || || || |||||||| ||||||||| | || |||||| || | |||| | | Sbjct 37875 TTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATT 37816 Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | || | | || ||||||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 37815 GACAATG-TCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 37757 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || |||| || ||||| |||||||||||| || || Sbjct 37756 GATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAA 37697 Query 38432 GG 38433 || Sbjct 37696 GG 37695 >seq199 Length=55906 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || || ||||||| || || || |||| || || || |||||||| Sbjct 32513 GACAAGGAGGGCATCCCTCCCGACCAGCAACGACTTATTTTTGCCGGAAAGCAGCTGGAA 32454 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || | ||||||||||||||| |||||| || ||||| | ||||| Sbjct 32453 GACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAAAGCACTTTGCATCTCGTGCTT 32394 Query 38457 CGTTTGAGAGGCGG 38470 ||| || | || || Sbjct 32393 CGTCTGCGTGGTGG 32380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166122693120