Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq199 105 3e-17 >seq199 Length=55906 Score = 105 bits (116), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| |||||||| || | || || ||||| || Sbjct 32834 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACTATCACATTGGAAGTCGAATCTTCG 32775 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || || ||||||||||||||||| ||||| ||||| || Sbjct 32774 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 32715 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | ||||| || || || ||||| |||||||| | || || ||| Sbjct 32714 CAGCGACTCATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 32655 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 32654 ATTCAGAAGGA 32644 Score = 86.0 bits (94), Expect = 2e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131 |||| || || || || || ||||| || || || || || | ||| || | | || Sbjct 33040 TGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGT 32981 Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191 || ||||| || |||||||| || ||||||||||| || || || |||||| | || | Sbjct 32980 CGAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAGCAGCGATTGATTTTCGCTGGTA 32921 Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251 | || || |||||||| | || | | || || |||||| | ||||| | || |||| Sbjct 32920 AGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAATATTCAGAAGGAATCCACTCTTC 32861 Query 391252 AC 391253 || Sbjct 32860 AC 32859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975691364763344