Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 190 3e-43 seq7 145 1e-29 >seq1 Length=575545 Score = 190 bits (210), Expect = 3e-43 Identities = 535/821 (65%), Gaps = 3/821 (0%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || || || | ||| || ||||||||||| ||| Sbjct 95310 TCATCCTCCTCCTTGTACTTCTCGGCTTCAGACAGCATGCGCTCGATGTCTTCTTTGGAT 95251 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | ||||||||| | | |||| || || Sbjct 95250 AGACGACCCTTGTCGTTGGTGATGACAATCTTGTTGGATTTACCGGTGCCCTTTTCAACA 95191 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||||| |||||||| ||||| | ||| || | || | || || || | Sbjct 95190 GCAGAGACATTCATGATACCATTGGCATCGAGATCAAAGGTAACTTCGATCTGAGGAACA 95131 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| ||||| || || | ||||| | || | | |||| ||| | Sbjct 95130 CCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCATGAGGTTGTTGTCCTTG 95071 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || || || ||| |||| | ||| |||| |||| || || || Sbjct 95070 GTGCGCTGTCGCTCGCCCTCAAAGACCTGAATGAGCACCCCAGGCTGGTTGTCAGAAAAG 95011 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | | ||||| | |||||| || || || | ||||| | | ||| Sbjct 95010 GTCGAGAAAACCTCCGACTTCTTGGTTGGAATGGTTGTGTTGCGGGGAATGAGCTTCGTC 94951 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || || ||||| || || | || ||||||| ||| | ||||| | || || | Sbjct 94950 ATCATTCCACCGGCGGTCTCAATACCCAGAGACAAAGGAGCGACGTCAAGCAGCAAGATT 94891 Query 6989 TCTTGAACAGATTCG---TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | ||| | | ||||| | | ||| || || ||||| | || ||| Sbjct 94890 TCATTGGTAGACTTGGAAGAAGTGTCACCAGACAGGATAGCAGCCTGGACAGCGGCACCG 94831 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| ||||| || | || || | ||||| ||||| || || || Sbjct 94830 TACGCAACAGCCTCATCAGGGTTGATAGACTTGTTGGGCTCTTTGCCGTTGAAGTAGTCG 94771 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || || ||| || ||||| || || ||||| ||||| || || |||| Sbjct 94770 GAGATGAGTTTCTGGATTCGGGGAATTCGGGTGGAACCACCAACCAAGACAATCTCATGA 94711 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 |||| ||||| || ||||| | ||| || ||||| || | || Sbjct 94710 ACTTGAGATTTGTCAATCTTGGCGTCAGTGAGAACACGGTCGACGGGCTGGATGGTGGAG 94651 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| ||| || || || ||||| || |||||||| | || |||||||| Sbjct 94650 CGGAAAAGATCCTGACAAAGCTCTTCGAAACGGGCCCGGGTAATAGGGGTGTAGAAATCG 94591 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||| ||| |||||||| ||||| || ||||| || | ||||| | || ||| Sbjct 94590 ATACCCTCGAATAGAGAATCAATCTCAATCGTAGTTTGAGCTGCAGAAGAGAGGGTGCGC 94531 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 || || || || || || || || | |||||| ||||| || Sbjct 94530 TTGGCACGTTCGCAAGCAGTACGGAGACGACGCAGGGCGCG 94490 Score = 181 bits (200), Expect = 1e-40 Identities = 490/742 (66%), Gaps = 16/742 (2%) Strand=Plus/Minus Query 7406 TTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATC 7464 |||||||| || ||||| || || || | | ||||| || || | |||||| || Sbjct 94415 TTCTTATGCTTGCGTTTGAATTCGTTGACA-AAGTGGTTAACAAGGCGGTTATCGAAGTC 94357 Query 7465 TTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAAT 7524 |||||||||||||| || || || ||||| | ||||| || |||||||| | ||||| Sbjct 94356 CTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACCTCGAAGATACCCTCCTCAAT 94297 Query 7525 GTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT---CGT 7581 | | | || ||||| || ||||| ||||| || || ||||| | || || | Sbjct 94296 TGTGAGGAGAGACACATCGAAGGTACCGCCACCTAGATCGAAAATCAAGACATTGCGCTC 94237 Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 | | ||| || ||||| |||||||| ||||| ||||| || || || || || || || Sbjct 94236 ACCCTCGACT---TTCTTGTCGAGACCATACGCAATAGCGGCGGCAGTAGGCTCGTTGAT 94180 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 |||||||| ||| || || ||||| | || || || || || || || || || Sbjct 94179 GATACGAAGGACGTTGAGTCCGGCAATGCGACCGGCGTCCTTGGTAGCCTGCCGCTGAGA 94120 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG-TCCGTGACTTTCTTACCGAGATACG 7760 ||||| |||||||| ||||| || ||||| ||| || | | | | || ||| | Sbjct 94119 GTCGTTGAAGTAGGCGGGGACAGTGACGACAGCGCTCGGAACCGATGTGCCCAAGA-AGC 94061 Query 7761 ATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACT 7820 || || || || ||| ||| | || | ||| || || || ||||||| | || | Sbjct 94060 CCTCTGCAATCTCGCGCATCTTGATGAGGATCATGGAAGATATTTCTTCAGGTGTGAATT 94001 Query 7821 GTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAA 7880 ||| ||| || || || || || | | ||| ||||| | | || | Sbjct 94000 CCTTCTCTTCGCCTTTGAATTCGACCTTGACCATAGGTTT---GCCTTGTCTTTCAATCA 93944 Query 7881 CCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGA 7940 |||| | | | | |||||||| | ||||||| | || ||||| | || | Sbjct 93943 CCTTGAAGGGAAAGTGCTTCATATCAGCCTGGACCTCCGGATCGTCGAACTTGCGGCCAA 93884 Query 7941 TAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCG 8000 | | ||| || || || ||||| ||||||| |||||||| || || ||||| || | Sbjct 93883 TCAAACGTTTGGCGTCGAAAACGGTGTTTTGAGGGTTCATAGCGACCTGATTCTTGGCGG 93824 Query 8001 CGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGAT 8060 | || || || ||||| || | || | || ||||| | ||||| || ||||| | Sbjct 93823 CATCGCCAATCAGACGCTC---GGTGTCATTGAATGCGACAAAAGATGGAGTAGTTCGGT 93767 Query 8061 TCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAAT 8120 | || || || || | ||||||||| ||||| | | ||| | ||||| || | Sbjct 93766 TACCCTGCTCATTGGGAATAATTTCGCATCGGTCATCGCGATAGATAGCCACGCAGGAGT 93707 Query 8121 ACGTTGTTCCTAAATCAATACC 8142 |||| || || || || ||||| Sbjct 93706 ACGTGGTACCCAAGTCGATACC 93685 >seq7 Length=322830 Score = 145 bits (160), Expect = 1e-29 Identities = 497/763 (65%), Gaps = 19/763 (2%) Strand=Plus/Plus Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 || ||||| | || ||||| || || |||||||||||||| || | || | || | Sbjct 10416 GCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTGATGCTCTTCTCGAGCTTC 10475 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 ||||||| ||| |||| || | | | || || || || || || || || ||||| Sbjct 10476 TTACCGTCAAAGAAATCGGACAGAAGCTTCTGGATCTTGGGAATACGGGTAGAACCACCA 10535 Query 7148 ACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCG 7207 ||||| ||||| || | || || || || ||||| | || || | || Sbjct 10536 ACCAAGACGATCTCGTCAACCTTGGACTTCTCGATGCCAGCATCCTTGAGAACCTGAGCG 10595 Query 7208 ACAGGTTCCATACATTTACGGAACAAGTC----CATACACAGTTCCTCAAAACGTGCACG 7263 ||||| || | | | || ||| | | | || ||| | || ||||| ||||| Sbjct 10596 ACAGGCTCAAGGG--TGCCAGAGAAAGCCTTGGCGTTCA-AGT-CTTCGAAACGAGCACG 10651 Query 7264 GGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG 7323 ||| |||| | ||| || | || ||| | | || ||||| || ||||| | || Sbjct 10652 GGTGATGGTCATGGTGAAGTCCTCACCATCGAAGAGGGAGTCAATCTCGATGGTGGCCTG 10711 Query 7324 TGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | || || || ||||| || ||||| || || ||||| | | || ||| Sbjct 10712 GGCACCGCTG--GACAAGGTACGCTTGGCACGCTCGCAAGCAGTTCGAAGTCTTCGCAGG 10769 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-G 7440 ||||| | | |||| ||||| ||||| || || | ||||||| | ||| | Sbjct 10770 GCACGGGCATCACCGCTCATATCCTTCTTGGACTTGCGGGTGAACTCTTTCTTGCAGTAG 10829 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 |||| ||| | | |||||||| | |||||||| || || || || ||||| || || Sbjct 10830 TCGAGCAAGT-TGGTGTCGAAATCCTGACCACCCAGATGGGTGTCACCAGCGGTAGCCTT 10888 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| |||| ||| || | ||||| | | || ||||| || ||||||||||| || Sbjct 10889 GACAGTGAAGACACCACCCTGGATGTTGAGAAGAGACACATCGAAAGTACCACCACCAAG 10948 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCT---TTGTTCTTATCGAGACCGTACGCGAT 7617 || | || || ||||| || | ||| ||| | |||||||| || || Sbjct 10949 ATCGTAGATCAGGACGTTGCGCTCCTTCTCTGACTTGCCAGAGCCCAGACCGTAGGCAAT 11008 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCG 7676 || || || || || || ||||| |||| || |||| || || |||| ||| | | | Sbjct 11009 GGCGGCAGCGGTGGGCTCGTTAATGATACGGAGGACA-TTGAGACCAGAAATGGCACCGG 11067 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 | || || || || || || || ||||| |||||||| ||||| || | ||| || | Sbjct 11068 CGTCCTTGGTAGCCTGACGCTGATTGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCCT 11127 Query 7737 CCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 | ||| ||||| || || | | || || || || ||||| Sbjct 11128 TCTCGACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCCTTCAT 11170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635124320977120