Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq64 286 4e-72 seq13 96.9 4e-15 >seq64 Length=130623 Score = 286 bits (316), Expect = 4e-72 Identities = 1119/1738 (64%), Gaps = 41/1738 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||| || ||| ||||||| || || | ||||| ||| Sbjct 42906 CCTCAGCACATGACTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAGCGCGTT 42965 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 |||||||| ||| || |||||| | | |||| |||||| |||| || |||||| Sbjct 42966 TTGGAGACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTC 43025 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || | || |||| |||||| || | | | ||||| || Sbjct 43026 AACGCCGGTACCCCCCAATGTCAGCTGTCTTCTTGTTTTCTAGTCGACATGAAGGATGAC 43085 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || |||| |||||||| |||||| ||||| ||| ||||||| Sbjct 43086 AGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 43145 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || |||| || | || | | ||| ||| || || ||| Sbjct 43146 GGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAAT 43205 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| ||| | || || ||||| |||||||| || || ||| ||| || | || || Sbjct 43206 GGTACATCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTT 43265 Query 111972 AACCAAGCTGGGCGTCG-CAAGGGATCTATCGCAGT------CTATCTTGAGCCATGGCA 112024 |||| ||||| | |||| || || ||| | ||| || ||||| ||||| Sbjct 43266 GACCA----GGGCGGCAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCA 43321 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 ||| || | | || || ||||| ||||| ||||| || | || || || || Sbjct 43322 CGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCATGGCAAGGAAGAAAACCG-TG 43380 Query 112085 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 | |||||||||||| ||||| ||||| |||||||||||||||||| | || || ||| Sbjct 43381 CTCGCGATCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGA 43440 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 ||| ||||| ||||| | ||||| || || || || || | ||| | || | Sbjct 43441 ATGGAGATTGGACTCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCG 43500 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTG 112262 |||||||||| || |||||| ||||| ||| || | || ||| | ||| | Sbjct 43501 AGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGACTATT 43559 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | || | || | | ||| | | || ||| |||| || ||||| || || | || | Sbjct 43560 CGTGC-CCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGGGCAACCCCTT 43618 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 |||||| ||||| || ||||| ||| |||||| || || ||||| |||| || Sbjct 43619 TATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACCATTCG 43678 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || |||||||| || || || ||| | || | | | |||||| ||||| || Sbjct 43679 CAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTTTG 43738 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATTTGATT 112500 ||| | || || | || || || | || || | | | | || | | | || | Sbjct 43739 CAACTTGGCCTCTCTTGCCCTTCCTGCCTTCGTCGA-CTACAAAGAAGGCCGCTACGACT 43797 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || |||||||| || || || ||| ||||| |||| | |||||| Sbjct 43798 TCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATTGATG 43857 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || ||||||| ||||| ||||| || || ||| |||| || || || ||| Sbjct 43858 TCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGGTG 43917 Query 112621 TCGGTGTCCAAGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 112679 | ||||| || ||||| || || | | ||| | || || ||| | || || || | Sbjct 43918 TTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTG-CGCATGCCCTTCGAGTCTCCC 43976 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || || || |||| || || || ||||| || || ||||| || || || Sbjct 43977 GAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCCCTGACAGCC 44036 Query 112740 AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 112799 | ||| |||| | | | || || || ||||| |||| ||||| || || Sbjct 44037 TCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCG 44096 Query 112800 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACTACGAC 112853 |||| | |||||||| || |||| |||| || |||| |||| | || Sbjct 44097 GAAGGTATTCTTCAATTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTGTGGGAG 44150 Query 112854 TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGG 112911 |||||| ||| ||||| | ||||||||| | ||| |||| ||| || || || | | Sbjct 44151 TGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAAC--TCGTTGCTGCTCG 44208 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||| || ||||||||| | ||||| ||||||| ||||| |||||||| || | Sbjct 44209 CTCCCATGCCCACCGCCTCCACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGCCAT 44268 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 ||||| | ||||| || | | | | | | || || || || | | |||||| Sbjct 44269 ACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACCCCT 44328 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 113091 ||| | | || ||| || || ||||||||||| | | |||||| | | ||| Sbjct 44329 GGCTCCTCAAGGATCTCGTCGATATGGGTCTCTGGTCTGATGCCATGAAGAACCGCATCA 44388 Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151 | | | ||||||||||| || || |||| || | || || ||| | | Sbjct 44389 TTGCCGAGAACGGTTCCATTCAGAACATCCCCAATATACCCGCCGACATCAAGGCTCTCT 44448 Query 113152 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211 || || |||||||| || | |||| || | |||||||| ||||| ||| Sbjct 44449 ACAAGACCGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCGGTG 44508 Query 113212 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAA 113269 ||| || || | |||| ||| | || | |||| | ||| || ||| ||| Sbjct 44509 CCTTTATCGACC--AGTCCCAGTCGCTCAACGTCCACATGAAGGATCCTACTATGGGCAA 44566 Query 113270 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 | || | ||||||||| | | |||||| ||||||||| ||||| ||||| ||| Sbjct 44567 GATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTAC 44624 >seq13 Length=282089 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||| ||| |||| | | || | |||||||||||||| ||| Sbjct 96930 GTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATATTCTGGCTCAAGAAGCGTGGT 96989 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 102323 || ||||| || ||| |||||| || || |||||||||||||| ||||| | ||| | Sbjct 96990 CTGATGCCCGGCCTCACCTTCTCTAATGAACTTATCTCTCGTGATGAGGGTTTGCACACA 97049 Query 102324 GAGTTTGC 102331 || ||||| Sbjct 97050 GACTTTGC 97057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734113088960