Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq64 248 1e-60 >seq64 Length=130623 Score = 248 bits (274), Expect = 1e-60 Identities = 1098/1705 (64%), Gaps = 55/1705 (3%) Strand=Plus/Minus Query 109378 AATTGGATTGGTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCA 109437 || ||||| ||| ||| |||| || ||| | || ||||| ||||| |||||||| Sbjct 44659 AACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGACCC 44600 Query 109438 GCCTTCCATGCGTACATA-TGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAA 109496 |||||| || || | ||||| || | || ||| | || ||| || ||| Sbjct 44599 AACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGTG 44541 Query 109497 CAAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGAT 109556 | ||| | |||||| ||||| ||||| || ||| ||||| || ||||| | ||| | Sbjct 44540 GACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAAC 44481 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 | || ||| ||||| || |||||||| | | |||||| || |||| || | Sbjct 44480 ATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGTATATT 44421 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGA 109673 |||||| ||||| || ||| || | |||| | | |||||| | | || Sbjct 44420 GGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGA 44364 Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACC 109733 ||||||||| | | |||||| | | || |||||| || |||||||| Sbjct 44363 CCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACC 44304 Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793 ||| | || || |||| ||||| | |||||| || || || ||||||||||| || Sbjct 44303 AGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACC 44244 Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 || ||||| | ||||| || |||||||||||||| | || | ||| || | ||| Sbjct 44243 CAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACC 44184 Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTC 109913 | | ||| | | |||| || |||||| || | || ||| | || || Sbjct 44183 GTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTC----CCACAACTCA--GAAGGCTT 44130 Query 109914 ACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTC 109973 ||| |||||| || |||||| | ||| || | || ||||| |||||||| | Sbjct 44129 GACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGA 44070 Query 109974 GTACGACCCCTCAACCTCGGCCAACTCGGATGA-AGCCTCT-AGTGCCGCATGATACATA 110031 ||| | || | | | ||||| ||| | || || || | || || || || || || Sbjct 44069 GTAGGGGCCTTGCTCTTTGGCCAGCTC--AAGAGAGGCTGTCAGGGCAGCGTGGTAGATG 44012 Query 110032 GTCTCAAAAATATGAGCATTCATGAG---GCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 ||||| || || || || |||| || | ||| | | |||||||| | | Sbjct 44011 GTCTCGAAGATCTG---CTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCA-TGCG 43956 Query 110089 CAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 || || || ||| | || || |||||||||||||| | ||| ||||| ||||| ||| Sbjct 43955 CAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCAT 43896 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 ||| | ||||| || | ||||||| |||| || |||| | ||||| || Sbjct 43895 GTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTT 43836 Query 110208 --CTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCC 110265 || | || | | |||| || ||||| || | | | ||| | | | ||| Sbjct 43835 ACGGACGAC-CACT-TGAGTGACCTCGTGGAGCTTCTGGAAGTCGTA-GCGGCCTTCTTT 43779 Query 110266 TTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTT 110324 || | ||| | || || |||| ||| || | ||||| |||| | ||| || Sbjct 43778 GTAGTCGACGAAGGCAGGAAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGG 43719 Query 110325 GTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTT 110384 | | ||| || | || ||||| |||| |||||| || |||| |||| |||||| Sbjct 43718 GGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTT 43659 Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444 ||| || || |||||| |||||||| || ||||| | ||| | || ||||| || Sbjct 43658 CTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGT 43599 Query 110445 CTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGA- 110500 ||| |||| ||| |||| | ||| | | || | ||| | | || ||||| || | Sbjct 43598 CTGGGACTCGAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCG---GCCAC 43543 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560 | || || ||| ||||| ||| | ||||||| |||| || || ||||| | Sbjct 43542 GGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCA 43483 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || || || |||||| | ||| | ||||| |||| || || || | ||||| Sbjct 43482 GGCCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCCATTCTTTTCGACGCGCTTCA 43423 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCAC 110680 |||| || || || ||||||| || ||| || || || ||| ||||| | | Sbjct 43422 TGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCTTGC 43363 Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740 | ||||| || | || | |||||| | | || | |||||| || ||||| |||| Sbjct 43362 CATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGA 43303 Query 110741 CAGC-GATG-----GATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCAT 110794 || ||| | || ||| | | || |||||| ||| || | || ||| | Sbjct 43302 TGGCAAATGCACCAGGTCGCTT--GTTG-CCGCCCTGGTCAACGTATCTGGCAGTGTTGT 43246 Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854 ||||||| | ||||| ||||| || || | |||| |||||| || || ||| | Sbjct 43245 TGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCATTGGTGCCGGCAATGTAAG 43186 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 | | ||||| ||| ||||| | || || |||||||| ||| ||| || Sbjct 43185 AGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCA 43126 Query 110915 GTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATT 110973 ||||| ||| |||| || | || ||||| ||||| || |||| || | | | Sbjct 43125 TGGCACAGGTCT-TGAGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGACT 43067 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033 ||||| |||||||||| |||| | || || || || |||||||||||||||| || Sbjct 43066 AGAAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCG 43007 Query 111034 TGAATGAACAGACCTTG--GGACAT 111056 || ||| ||| |||| |||||| Sbjct 43006 TGGGTGA--AGAGCTTGCTGGACAT 42984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588968137170400