Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq64 295 8e-75 seq13 93.3 5e-14 >seq64 Length=130623 Score = 295 bits (326), Expect = 8e-75 Identities = 1171/1809 (65%), Gaps = 53/1809 (3%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTT 105654 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 44623 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 44565 Query 105655 GGACATCGTTGGACTTTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGA 105712 | ||| || ||| | |||| | || | ||| |||| |||| || ||| | Sbjct 44564 GCCCATAGTAGGATCCTTCATGTGGACGTTGAGCGACTGGGACT--GGTCGATAAAGGCA 44507 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 || || | || ||||| | || |||| | || ||||| || || |||| Sbjct 44506 CCGCGATCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAG 44447 Query 105773 AGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTG 105829 ||| |||||| || | || |||| | ||| || ||||| ||||| | | || || Sbjct 44446 AGAGCCTTGATGTCGGCGGGTATATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATG 44387 Query 105830 ACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 | || | | |||||| | | ||||| ||||| || | |||||| |||| ||| Sbjct 44386 A---TGCGGTTCTTCATGGCATCAGACCAGAGACCCATATCGACGAGATCCTTGAGGAGC 44330 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 |||||| | | || || || || | | | | | | || ||||| | |||| Sbjct 44329 CAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTG 44270 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 106009 || || |||||||| ||||| ||||||| ||||| | ||||||||| || ||||| || Sbjct 44269 TATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGA 44210 Query 106010 GCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCC 106067 || | || || || ||| |||| ||| | |||||||| | ||||| ||| |||| Sbjct 44209 GCGAGCAGCAACGA--GTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCC 44152 Query 106068 AGTCGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGA 106125 | || | | || || || || |||| |||| || |||||||| | |||| || Sbjct 44151 ACTCCCACAACTCAGAA-GGCTTGACATTCC-ACATGTCGAATTGAAGAATACCTTCCGA 44094 Query 106126 CGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 106185 | |||||| |||| || || |||| ||||| ||| |||| ||| || | Sbjct 44093 GGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGG 44035 Query 106186 CTC-CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 106244 || ||||| ||||| || ||||| || ||||| | || | ||| ||| || Sbjct 44034 CTGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGG 43975 Query 106245 CTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAA 106303 || || || | ||| || | || ||| | || || ||||| |||||||| | | Sbjct 43974 GAGACTCGAAGGGCATGCG-CAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACA 43916 Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 106363 || || |||| |||||||| || || || || ||||| ||| ||| || Sbjct 43915 CCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACA 43856 Query 106364 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 106423 ||||||| ||| || || | || | | |||| || || || || | | Sbjct 43855 TCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAG 43796 Query 106424 TCAAAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 || | || ||| | | | ||| | |||||||| | || ||||| ||||| Sbjct 43795 TCGTAGCGGCCT-TCTTTGTAGTCGACGAAGGCAGGAAGGGCAAGAGAGGCCAAGTTGCA 43737 Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542 |||||| |||||| | |||||| | || || || |||| |||||| || Sbjct 43736 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCG 43677 Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602 ||| || |||| ||||| ||||| |||||| ||||||| ||||||||||| ||||| | Sbjct 43676 AATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAA 43617 Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTA 106661 ||| | ||||| || ||||| |||| ||| || | | ||| | | || | ||| | Sbjct 43616 GGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTG-GGCACG-- 43560 Query 106662 CAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 ||| | || |||| || ||||| ||| ||||| |||||| || |||||||||| Sbjct 43559 -AATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCT 43501 Query 106719 CACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777 | ||| || || | || || || || || ||||| | |||| ||| | ||| Sbjct 43500 C-GCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCCA 43442 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 106837 || || || ||||||||||| || ||||| |||||||| | |||||||| | | Sbjct 43441 TTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGA 43382 Query 106838 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 106897 || ||||| | || ||||| ||| || ||||| || || | | || ||| Sbjct 43381 GCACGGTTTTCTTCCTTGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCG 43322 Query 106898 TGCCATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTGATT 106950 ||||| ||||| || ||| | ||| || || ||| | | ||||| || | Sbjct 43321 TGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCC----TGGTC 43266 Query 106951 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 107010 || || | || ||| ||| || || |||||||| ||||| || || | ||| ||| Sbjct 43265 AACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACC 43206 Query 107011 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 107070 ||| || || ||| ||| | || | | |||| || || || ||||| Sbjct 43205 ATTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACC 43146 Query 107071 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 107130 |||||| ||| ||||| ||||| | | ||||| | |||||||||| || Sbjct 43145 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCT 43086 Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 107190 ||| ||||| || ||| || || ||| |||| ||| | || ||||| || || Sbjct 43085 GTCATCCTTCATGTCGACTAGAAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTT 43026 Query 107191 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCC 107248 |||||| || |||| ||||| ||| | | |||| |||||| || ||| |||||| Sbjct 43025 GAAGAGTGTAGGTGAGGCGTGGGTGA--AGAGCTTGCTGGACATGAGGTGGTAGGTCTCC 42968 Query 107249 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGG 107308 || || ||||||| || || || |||| || || |||||| ||||| || Sbjct 42967 AAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAGTCATGTGCTGA 42908 Query 107309 GGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAG 107367 ||| || | || |||| | ||| ||||||| | || |||| || || || | Sbjct 42907 GGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCTAGAGTCTTAAA 42849 Query 107368 ACCAAAGTA 107376 |||||||| Sbjct 42848 GCCAAAGTA 42840 >seq13 Length=282089 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||||||||| || || ||||||||||| |||||| ||||| Sbjct 97057 GCAAAGTCTGTGTGCAAACCCTCATCACGAGAGATAAGTTCATTAGAGAAGGTGAGGCCG 96998 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| ||||| |||||||| | ||| | || | | || | ||| ||||||||| Sbjct 96997 GGCATCAGACCACGCTTCTTGAGCCAGAATATCGAGGCAAAGGCACCGCTGAAGAAGATG 96938 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 |||||||| || || || | | ||||| ||||||| Sbjct 96937 CCCTCCACGGCAGCGAAAGCCACCAAGCGCTGGGCGAAG 96899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589972923756320