Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq199 161 2e-34 seq32 152 1e-31 >seq199 Length=55906 Score = 161 bits (178), Expect = 2e-34 Identities = 162/209 (78%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||||||||| || || ||||||||||| |||| || || | |||||||| Sbjct 32854 ACGAGGTGAAGAGTGGATTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCC 32913 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| ||||| || | ||| || || || ||||| || ||||| ||||| ||| Sbjct 32914 AGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGA 32973 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| || || || |||||||| | |||||| Sbjct 32974 ATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTT 33033 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || ||| |||||| Sbjct 33034 CCGGTCAAAGTCTTGAC-AACTGTTGCAT 33061 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| || ||||||||||| |||| | ||||| ||||| ||||||||||| || Sbjct 32637 AGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTCCC 32696 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| ||||| || ||||| || ||||||||||| || |||||||| || ||| Sbjct 32697 GGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTT 32756 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || || || || |||||| ||| ||||| | || | || || || |||||||| Sbjct 32757 TACATTATCGATCGTATCCGAAGATTCGACTTCCAATGTGATAGTTTTGCCAGTCAAAGT 32816 Query 195123 TTTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 32817 CTTGACGAAGATCTGCAT 32834 Score = 138 bits (152), Expect = 3e-27 Identities = 164/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || ||||| || || |||||||| || | |||||| | ||||| || Sbjct 33154 AACGAGGTGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTC 33213 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || || || ||||| || || || || || ||||| || Sbjct 33214 GAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCCTG 33273 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| || ||||| ||||| || || || || || |||| ||||| Sbjct 33274 AATCTTCGACTTGACATTGTCAATAGTGTCAGAGGACTCGACCTCGAGAGTAATGGTCTT 33333 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTT 195152 || || | || || ||||| | |||| |||||||||| Sbjct 33334 GCCGGTGAGGGTCTTGACGAAGATTTGC----ATGGTTACTT 33371 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || | |||| || || || || ||||| ||| || || | || ||||| Sbjct 32398 ACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCC 32457 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || ||||||||||| ||||| ||||| ||||| || ||||| ||| Sbjct 32458 AGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGA 32517 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || || ||||| || ||| ||||||||| | |||| |||||| Sbjct 32518 ATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCCACTTCCAAAGTAATAGTCTTT 32577 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | |||||| Sbjct 32578 CCAGTCAAGGTCTTGACAAAAATTTGCAT 32606 >seq32 Length=184707 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||| ||| || || || ||||| ||| || || | ||||| |||||||| Sbjct 81316 GTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTG 81257 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || |||||||||||||| ||||| || |||||||| || ||||| || || || Sbjct 81256 CTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 81197 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| ||| ||||| |||||||| | |||||| || || Sbjct 81196 GGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGT 81137 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| Sbjct 81136 GAGGGTTTTGACGAAAATCTGCAT 81113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109466418131156