Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq199 105 4e-18 seq32 98.7 6e-16 >seq199 Length=55906 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| ||||| | || |||| || ||||| ||||| || || Sbjct 33173 TCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAG 33232 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| || |||||||| |||| | ||||||||||| ||||||| ||||| Sbjct 33233 ATTAGACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTG 33292 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || ||| || |||| || ||||| || || ||||| ||||| || Sbjct 33293 TCAATAGTGTCAGAGGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACG 33352 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 33353 AAGATTTGCAT 33363 Score = 96.9 bits (106), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 |||||||| ||||| ||||| ||||| || | || | || |||||||| |||||| Sbjct 32410 GTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 32469 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || |||||||||||||| | || | ||||||||||| |||||| |||| Sbjct 32470 GCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGATTTG 32529 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| ||| | || || || | || || || ||||| || | Sbjct 32530 AC--AT--TGTCGATGGTATCAGAAGATTCCACTTCCAAAGTAATAGTCTTTCCAGTCAA 32585 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| || |||||| Sbjct 32586 GGTCTTGACAAAAATTTGCATA 32607 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || ||||| || | |||| |||| || ||||| || |||||||| Sbjct 32644 TCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAG 32703 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | || ||||| || |||||| || || || Sbjct 32704 ATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTTAC--AT 32761 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| | ||| | || || || | || || ||||| || || | |||||| Sbjct 32762 --TATCGATCGTATCCGAAGATTCGACTTCCAATGTGATAGTTTTGCCAGTCAAAGTCTT 32819 Query 34967 CACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 32820 GACGAAGATCTGCATA 32835 >seq32 Length=184707 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||| ||||| ||||| ||| | || |||| || Sbjct 81321 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 81262 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || |||||||||||||| | || | ||||||||||| Sbjct 81261 AGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 81202 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| || || || Sbjct 81201 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 81142 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| || || || || |||||||| || Sbjct 81141 CCCGTGAGGGTTTTGACGAAAATCTGCATCTT 81110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629374487904