Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq64 131 2e-25 >seq64 Length=130623 Score = 131 bits (144), Expect = 2e-25 Identities = 308/463 (67%), Gaps = 4/463 (1%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| || || ||||| || | | | ||||| || || || |||||||| | | Sbjct 43511 CTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGT 43452 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 |||||| ||| |||| || | |||| || | |||||| ||||| ||||| | || Sbjct 43451 CCAATCTCCATTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAA 43392 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | ||| | || | |||||| |||||| ||| || | ||||||||||| | Sbjct 43391 GAGATCGCGAGCACGGTTTTCTTCCTTGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAA 43332 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | || || ||||| || || | || || || | | |||| ||||| || || || || Sbjct 43331 CACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCC 43272 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||||| ||||| | || | | ||| || | || || || || Sbjct 43271 CTGGTCAACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGA 43212 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATA 48482 | |||||||||| || | ||| ||| || |||| | || | || || Sbjct 43211 TGTACCATTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA--G 43154 Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || |||||||| ||||| || || || | ||||| || || || || || || || Sbjct 43153 CCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCG 43094 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACA 48585 || || || ||||| |||| | | |||||||||| ||||| Sbjct 43093 TCAATGCTGTCATCCTTCATGTCGACTAGAAAACAAGAAGACA 43051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562101295847520