Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 172 4e-37 seq199 100 2e-15 seq11 100 2e-15 >seq1 Length=575545 Score = 172 bits (190), Expect = 4e-37 Identities = 467/709 (66%), Gaps = 7/709 (1%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 || || |||||||| | |||||||||||| | ||||| || | || || |||| || Sbjct 94493 GCCCTGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCT 94552 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||||| || ||||| | ||||| |||| ||||| || |||| | || |||||| | Sbjct 94553 CAAACTACGATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACC 94612 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| || ||||| ||||| ||||| || | || || | || || || Sbjct 94613 CGGGCCCGTTTCGAAGAGCTTTGTCAGGATCTTTTCCGCTCCACCATCCAGCCCGTCGAC 94672 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | ||| | | || | |||||||| ||||| |||| ||||| ||||| | |||||| Sbjct 94673 CGTGTTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGT 94732 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC--TTATTTCAATGGTAAAA 552192 || || || ||||||| || || |||| | | | | || ||||| || ||| Sbjct 94733 GGTTCCACCCGAATTCCCCGAA-TCCAGAAA-CTCATCTCCGACTACTTCAACGGCAAAG 94790 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 | || | | | || || |||||||||||||| || |||||||| | || || | Sbjct 94791 AGCCCAACAAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTG 94850 Query 552253 CTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTA 552309 |||| || ||||| | || | | || |||| || | || | || | || || Sbjct 94851 CTATCCTGTCTGGTGACACTTCTTCCAAGTCTACCAATGAAATCTTGCTGCTTGACGTCG 94910 Query 552310 CTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAA 552369 ||||| | ||||| ||| | || || | || || || ||||| || || || | | Sbjct 94911 CTCCTTTGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCCCGCA 94970 Query 552370 ATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTG 552429 | || || ||||| || || || || || || || | ||| || || || ||| Sbjct 94971 ACACAACCATTCCAACCAAGAAGTCGGAGGTTTTCTCGACCTTTTCTGACAACCAGCCTG 95030 Query 552430 CTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG 552489 || ||||| | ||||| || || || | ||| || || || || | | | Sbjct 95031 GGGTGCTCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTCATGG 95090 Query 552490 GTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTA 552549 | | ||| | | || ||||| || ||||| ||||| || || || || ||||||| Sbjct 95091 GCAAGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATCGAAGTTA 95150 Query 552550 CTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 | || ||| ||||||||||||| || ||||||| ||||| ||| || Sbjct 95151 CCTTTGATCTCGATGCCAATGGTATCATGAATGTCTCTGCTGTTGAAAA 95199 Score = 140 bits (154), Expect = 3e-27 Identities = 326/486 (67%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||||||| ||||||| || |||||| ||||||||||||||| ||| | |||| || Sbjct 93742 GAAATTATTCCCAATGAGCAGGGTAACCGAACTACTCCATCTTTTGTCGCATTCAATGAC 93801 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | | | |||| ||||| || || |||| | | || || ||| || || Sbjct 93802 ACCGAGCGTCTGATTGGCGATGCCGCCAAGAATCAGGTCGCTATGAACCCTCAAAACACC 93861 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 |||| || || |||||||| ||||| | | || | ||| || || ||||| ||| Sbjct 93862 GTTTTCGACGCCAAACGTTTGATTGGCCGCAAGTTCGACGATCCGGAGGTCCAGGCTGAT 93921 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT--- 550291 |||||||| | || ||| | | || | || ||||| ||| | ||| | Sbjct 93922 ATGAAGCACTTTCCCTTCAAGGTGATTGAAAGACAAGGCAAACC-TATGGTCAAGGTCGA 93980 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | ||| |||| | || |||| |||| ||| |||| || || ||| | | || Sbjct 93981 ATTCA--AAGGCGAAGAGAAGGAATTCACACCTGAAGAAATATCTTCCATGATCCTCATC 94038 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAAC 550410 || ||| | | | ||| | || |||| || | ||| || || || | || Sbjct 94039 AAGATGCGCGAGATTG-CAGAGGGCTTCTTGGGCACATCGGTTCCGAGCGCTGTCGTCAC 94097 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| || || || || || ||||| || || || ||||| || || || || || ||||| Sbjct 94098 TGTCCCCGCCTACTTCAACGACTCTCAGCGGCAGGCTACCAAGGACGCCGGTCGCATTGC 94157 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||||| || || |||||||| ||||| || |||||||| || || |||| ||||| || Sbjct 94158 CGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCCGCTATTGCGTATGGTCT 94217 Query 550531 TGATAA 550536 || || Sbjct 94218 CGACAA 94223 >seq199 Length=55906 Score = 100 bits (110), Expect = 2e-15 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||| || || ||||| | || ||||| || || ||||| || ||| || || | Sbjct 32389 AGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCG 32447 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| || || ||||||||||||||||||| |||||| || ||||| || || || Sbjct 32448 GCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTC 32507 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 || || ||||| || ||| || || || ||||||| || | || ||| | || Sbjct 32508 CTTGTCCTGAATCTTGGATTTGACATTGTCGATGGTATCAG-AAGATTCCACTTCCAAAG 32566 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| ||| || ||||| | || || || |||||||||||| Sbjct 32567 TAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 32607 Score = 87.8 bits (96), Expect = 1e-11 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||||||||| || | | ||||| ||| || || || || |||||||| || |||| Sbjct 32652 AATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGTCG 32711 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||||| ||||| ||||| ||||| ||||||||||| || ||||| || || || Sbjct 32712 CTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGT 32771 Query 563412 ATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 ||| | || | | ||| | || | |||||| ||||| | ||| || ||||| || | Sbjct 32772 ATCCG-AAGATTCGACTTCCAATGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCT 32830 Query 563471 GCATA 563475 ||||| Sbjct 32831 GCATA 32835 >seq11 Length=285515 Score = 100 bits (110), Expect = 2e-15 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCA-AGCTACTAAAGATGCTGGACGTAT 550467 |||||||| || || |||||||| | || ||||| ||| || || |||||||| | || Sbjct 19128 ACTGTACCTGCCTACTTTAATGATGCTCAGCGTCAGAGC-ACCAAGGATGCTGGTCAGAT 19186 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || |||||||| ||| | |||| || || ||||||||||| ||||| ||||| Sbjct 19187 CGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTATGG 19246 Query 550528 ACTTGATAA 550536 |||||||| Sbjct 19247 TCTTGATAA 19255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029239519343320