Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq199 131 1e-25 >seq199 Length=55906 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | || ||||| | ||||| || || || |||||||| |||| Sbjct 32608 CCACCTCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 32667 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | |||| || | ||||| || ||||| || | ||||| || || || ||| Sbjct 32668 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 32727 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||||||||| || |||||| | || | || || || | ||| ||| Sbjct 32728 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 32787 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| |||||||| || ||||| || || || |||||||| Sbjct 32788 TCCAATGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || |||||||| || | | ||| | | |||| || | ||| Sbjct 33161 TGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGC 33220 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| || |||||||| || || || || || ||||| || Sbjct 33221 TTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCCTGAATCTTC 33280 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||||||| | || || || ||||| | || |||||||| Sbjct 33281 GACTTGACATTGTCAATAGTGTCAGAGGACTCGACCTCGAGAGTAATGGTCTTGCCGGTG 33340 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTAC 101475 | || || || || || ||||||||||| Sbjct 33341 AGGGTCTTGACGAAGATTTGCATGGTTAC 33369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396273241941276