Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq64 408 8e-109 seq13 114 2e-20 >seq64 Length=130623 Score = 408 bits (452), Expect = 8e-109 Identities = 1082/1632 (66%), Gaps = 68/1632 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| ||||| | ||||||||||| ||||| Sbjct 44665 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 44606 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGG 212672 || ||| |||||| | |||||| | |||| |||| | || || || Sbjct 44605 AGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGA---TCTTGCCCATAGTA----GG 44553 Query 212673 TCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTG 212732 ||||| || || | ||| || ||||| |||||| || || | | | Sbjct 44552 --ATCCTT------CATGTGGACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGA 44501 Query 212733 TCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCT 212792 || |||||||| | || | || | ||| || | |||||| ||||||||| ||| | Sbjct 44500 TCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCC 44441 Query 212793 TTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCA--GCT 212850 |||| ||| | || | |||||||||||| | || || || | | | || | | Sbjct 44440 TTGATGTCGGCGGGTATATTGGGGATGTTCTGAATGGAACC---GT-TCTCGGCAATGAT 44385 Query 212851 GCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGG 212908 || | |||| | || |||||| ||| | | || ||||| || || Sbjct 44384 GCGGTTCTTCATGGCATCAGACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGG 44325 Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 |||||| | |||||| ||||| | | || | | |||||||| ||| || ||||| || Sbjct 44324 GTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGG 44265 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||| | || ||| ||||| |||||||| || | ||| ||| |||||||||||||| | Sbjct 44264 CTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAG 44205 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA 213088 ||| | ||| | | |||||||| ||| | | || | |||| ||||| Sbjct 44204 CAGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCA 44145 Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148 |||| ||| ||| || ||||||||||| || || | || |||| Sbjct 44144 CAACTCAGA-AGG--------CTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGA 44094 Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208 |||| ||||| | | | ||||||||||| ||||| ||||||||||| || || Sbjct 44093 GGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGC 44034 Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268 ||||||||||| ||||||||| || || |||| | ||||||||| |||||| || Sbjct 44033 TGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGG 43974 Query 213269 GGACGTGAAGGGCATCATCATGCGTTGGAACA-CATCAGCCAGCCCCTGGACCCCGATGC 213327 ||| ||||||||| || | | ||| | | || || || ||||| || || | | Sbjct 43973 AGACTCGAAGGGCATGCGCA-GAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACAC 43915 Query 213328 CGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAG 213386 ||||||||| |||| || ||| ||| |||| |||||| | ||||||| |||| Sbjct 43914 CGATGGGTCGATGTCGCATGTTGCTGTTGCGAGC-CTCCTCAATGGGGTAATGGTTGACA 43856 Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGA 213446 || ||||||||||||||||| ||| | |||||| ||||| | | || | | Sbjct 43855 TCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTC------ 43802 Query 213447 TTGAACACGTAGCCCCC------GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 | ||| |||||| || || | || || |||| ||||| | ||||| | Sbjct 43801 TGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGGAAGGGCAAGAGAGGCCAAG 43742 Query 213501 TTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 |||||||| || ||||| | || | | |||||| |||||||| |||||||||||| | Sbjct 43741 TTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAG 43682 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGC 213620 | || ||||| |||||||||| ||||| |||| |||| | ||||||||| ||| Sbjct 43681 CTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGC 43622 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 || ||||| || || || ||||||| | || || | |||||| | | ||| Sbjct 43621 ATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGC- 43563 Query 213681 TTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTGAA 213739 || | | || | || ||| | | | ||| |||| |||||||| | | || Sbjct 43562 ---ACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAA 43506 Query 213740 TTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGT 213798 || | ||| || | | | |||| || || || |||||||||||| |||| | Sbjct 43505 CTCCTCGCCATAGCAATCAG-CCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCAAT 43447 Query 213799 CCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 | || | | | ||| | || |||||| || || |||| |||||| || ||| || | Sbjct 43446 CTCCATTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGAT 43387 Query 213859 CCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGT 213918 | | | | | || ||| ||| ||| || |||| ||| ||||||||||| | || Sbjct 43386 CGCGAGCACGGTTTTCTTCCTTGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGT 43327 Query 213919 CCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGT 213975 | |||||||| ||||| | |||||||||||| || || | || | ||||||||||||| Sbjct 43326 CTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGT 43267 Query 213976 CCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT- 214034 | || ||||| ||||||||| || || | ||| | | |||||||| ||| Sbjct 43266 CAACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGA-TGTA 43208 Query 214035 CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCC 214090 || ||||| || || || || ||||||| || | || ||| |||| | || Sbjct 43207 CCATTGGTGCCGGCAATGTAAGAGCCGGTAGCAC---GGATGC-GGTGGACGTTCAAGCC 43152 Query 214091 TATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGC 214150 || ||||| || ||||||||||||||| ||| | | | ||| || ||| ||| | Sbjct 43151 GATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTC 43092 Query 214151 CATGCTGTCATC 214162 ||||||||||| Sbjct 43091 AATGCTGTCATC 43080 >seq13 Length=282089 Score = 114 bits (126), Expect = 2e-20 Identities = 348/525 (66%), Gaps = 27/525 (5%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || |||| ||||| |||||||| ||||| || |||| || |||||||| Sbjct 97349 CTGATATTCTCCAACTCGCTTCTCGAAGAAGTTCGTCTTGCCACCCAAGGAAATGTTCTC 97290 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 |||||| ||||||||||| || || || ||| | || ||| | ||| | Sbjct 97289 CATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTT-TCGTTACCAAGAGCAACCAATA 97231 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG-G 48016 | |||| ||||| | || || |||| ||| || ||| ||||||||||| ||| | Sbjct 97230 AGCGATCGGCGACAAATTCAATATATTGCTTCATCAGTGTGGCGTTCATGCCTAGGAGAG 97171 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 |||| |||| ||||| || | |||||| | ||| ||| || || || | || Sbjct 97170 CACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATCCCAACAGCGTCGGTGATGATA 97112 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGC--GC-AGGTGCTTGGCAT---AG---AGC 48127 | || ||| | | ||| |||| || ||||||| || || | | Sbjct 97111 TCCT-------GGA---TAA--TTTTCTTGCTGGCTCGGTGCTTAAGATGCGAGTGCAAC 97064 Query 48128 ATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAG 48187 | || |||||||| ||||||| || || || || ||| || | || |||||| | Sbjct 97063 AGACATGCAAAGTCTGTGTGCAAACCCTCATCACGAGAGATAAGTTCATTAGAGAAGGTG 97004 Query 48188 AGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG 48247 || || ||||| | || | || ||||||||||| || | || || | || |||| Sbjct 97003 AGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAATATCGAGGCAAAGGCACCGCTGAAG 96944 Query 48248 AAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGT-C 48306 |||||||||||||| || ||||| || | | || |||| | | ||||| | Sbjct 96943 AAGATGCCCTCCACGGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCC 96884 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| ||||| || ||||||||||| || ||| |||||| || Sbjct 96883 TGA-ATCCAACGAATGGCCCAGTCTGCTTTTTTCCGGATGCAGGG 96840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931520364037120