Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq64 365 8e-96 seq13 104 4e-17 >seq64 Length=130623 Score = 365 bits (404), Expect = 8e-96 Identities = 868/1286 (67%), Gaps = 57/1286 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475 |||||||||||||||||||||||||| |||||| ||||||||| ||| || ||||||| Sbjct 44032 GTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGGGCCTCGGG 43974 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||||||||| ||||| |||| ||||||| || ||||| || || | ||| Sbjct 43973 AGACTCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACC 43914 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCG-GCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 |||||| | |||| | ||||| | ||| ||| | || | ||| ||| |||||| Sbjct 43913 GATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCA---ATGGGGTAATGGTTGAC 43857 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 || || | ||||||||||| | || |||| | |||||| ||||||||| Sbjct 43856 ATCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAA 43797 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 | | | || ||| || | | | || || || || ||||||| Sbjct 43796 GTCGTA---------GCGGCCTTCTTTGTAG---TCGACGAAGGCAGGAAGGGCAAGAGA 43749 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| ||| || || || ||||| || | |||| |||||||| || || || Sbjct 43748 GGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAG 43689 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || ||||| ||||||| || || || ||| | ||| || ||||| Sbjct 43688 GTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTT 43629 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||||||||| ||| || || ||| | | | || || || |||||| | Sbjct 43628 GTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCT- 43570 Query 221893 TCTGG-CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATAGAG 221949 ||||| | | | ||| | | | ||||| || ||||| | ||| |||| Sbjct 43569 TCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT---CATACTTCTCGTAGAGAG 43513 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | | |||||| || || || || ||||||| || ||| | ||||||||| || Sbjct 43512 CCT--CAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAG 43455 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 | |||| | || | || ||| | || ||||||||| || ||||||||||| || | Sbjct 43454 AGTCCAATCTCCATTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAG 43395 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 |||||||| | | || | || ||| ||| | ||| || | || ||| | ||| || Sbjct 43394 GAAGAGATCGCGAGCACGGTTTTCTTCCTTGCCATGGTTCTTTCGCAAATCAAGAAAGTC 43335 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 ||| | ||| |||||||| ||||| || |||| ||| | || || |||||||||||||| Sbjct 43334 AAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCC 43275 Query 222190 ACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 ||||| || || || ||| | |||||||| ||||| | || | | |||| Sbjct 43274 GCCCTGGTCAACGTATCT-GGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGT 43216 Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG-CAG 222305 ||||| ||| |||||||| |||||| | ||| || | || | | ||| | Sbjct 43215 TGGATGTACCATTGGTGCCGGCAATGTAAGAGCCGGTAGCAC---GGATGCGGTGGACGT 43159 Query 222306 ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGA 222365 || |||||||||||| || || ||||||||||| ||| ||||||||||||| || Sbjct 43158 TCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGA 43099 Query 222366 TGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGG 222425 | || || || ||| ||||| | || | ||||||||||| |||| |||| ||| || Sbjct 43098 TACCGTCAATGCTGTCATCCTTCATGTCGACTAGAAAACAAGAAGACAGCTGACATTGGG 43039 Query 222426 TGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACATCAGA 222484 || || |||||| || || || || |||||| || ||| ||| || ||||| || Sbjct 43038 GGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG-AGCTTGCTGGACATGAGG 42980 Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-----CTGCATGGCGCATC 222539 | ||| ||||| | || | | |||||||| || ||| | ||| |||||| Sbjct 42979 TGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCAT- 42921 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACG 222596 || ||||| ||| || | ||| || | | || | ||| | |||| || || | Sbjct 42920 ---AGT-CATGTGCTGAGGTCGCTCGAC-GATCTTGCCGTTGAGTTTGAGA--AGATATG 42868 Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGA-GGTCAAAGTCTCTGCCGTGAACCACG 222655 || | || |||||||| || |||||||| |||| || ||||||||| ||| || | | Sbjct 42867 ATCTCTCTAGAGTCTTAAAGCCAAAGTA-TTGATAGTTGAAGTCTCTGTCGTAGACAATG 42809 Query 222656 GCGGCGTCCAGCTCCGACTTGTGCTT 222681 |||| ||| |||||| |||||| || Sbjct 42808 GCGGAGTCAAGCTCCTCCTTGTGTTT 42783 >seq13 Length=282089 Score = 104 bits (114), Expect = 4e-17 Identities = 180/259 (69%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| || ||| |||||| ||||||||||| |||||| Sbjct 96447 ATTTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATAGATCTG 96506 Query 25537 GCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTT--TCTCA 25591 |||||||| || ||| ||| || ||| | | |||||| | | || ||||| Sbjct 96507 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTCA 96566 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 || | |||||||||||||| || ||||| || || || || || || || ||| Sbjct 96567 --CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAGC 96624 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| | | || || ||| |||||| || ||||| || |||||||| | Sbjct 96625 GTTTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGA 96684 Query 25712 TCGAAAATGTGCACTCTGA 25730 | || ||| | |||||||| Sbjct 96685 TGGAGAATATCCACTCTGA 96703 Score = 100 bits (110), Expect = 5e-16 Identities = 290/449 (65%), Gaps = 11/449 (2%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| || || ||||| |||||||||||||| ||||||||| | ||||| | | Sbjct 96907 AGCGCTTGGTGGCTTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGA 96966 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 | |||||||||||| || || |||||||| || ||| || || || || ||| Sbjct 96967 TATTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAATGAACTTATCT 97026 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | || |||||| | |||| ||| ||||| || ||| | ||| || ||| | Sbjct 97027 CTCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTG--TTGCACTCGCATCTTAAGCA 97084 Query 26057 ACAAACCTTCTCAAGAGACCGTCTACAG--TATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 | | || ||||| | | | ||| |||||||| || ||||| | ||| ||| | Sbjct 97085 CCGAGCC--AGCAAGA-AAATTATCCAGGATATCATCACCGACGCTGTTGGGATTGAGCA 97141 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAG 26174 |||||| | ||||||||| || ||| |||| Sbjct 97142 AGAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTGATGAA 97201 Query 26175 CCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTC 26232 ||||| ||||| | ||| ||||| | | || ||| || || || | | Sbjct 97202 GCAATATATTGAATTTGTCGCCGATCGCTTATTGGTTGC--TCTTGGTAACGAAAAGGTA 97259 Query 26233 TACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAAC 26292 |||| || | ||||| ||||| || ||||| ||||| || |||| || ||||| ||| Sbjct 97260 TACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACGAAC 97319 Query 26293 TTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| || ||| | || || || ||||| Sbjct 97320 TTCTTCGAGAAGCGAGTTGGAGAATATCA 97348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928832399921920