Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq199 109 4e-18 seq11 93.3 3e-13 >seq199 Length=55906 Score = 109 bits (120), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || || || ||||| || || | ||| || |||| ||||| Sbjct 33143 CGAAGGCGGAGAACGAGGTGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTG 33202 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || || ||||||||||| || || ||||| || || || || || ||||| Sbjct 33203 CGGCCATCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGGGATTCCC 33262 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| |||||||| |||||| |||||||| |||| | || || Sbjct 33263 TCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGAGGACTCGACCTCGAGA 33322 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || |||||||| ||||| ||||| ||||| Sbjct 33323 GTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 33360 Score = 105 bits (116), Expect = 4e-17 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| ||||| || || ||||| | || ||||| || | || || || ||| || | Sbjct 32385 ACGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGCG 32443 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||||| || |||||||| ||||||||||| ||||| || || ||||| || | Sbjct 32444 TGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGC 32503 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | |||||||| |||||||| ||||||| || || ||||||| | | | || || Sbjct 32504 CCTCCTTGTCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCCACTTCCA 32563 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | |||||||| || || || | ||||| || |||||||| Sbjct 32564 A-AGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTG 32603 Score = 91.5 bits (100), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || || ||||| || ||| || || ||| || || | || || Sbjct 32841 ACGGAGGCGGAGGACGAGGTGAAGAGTGGATTCCTTCTGAATATTGTAGTCGGAGAGGGT 32900 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| ||||| ||||| | || || ||||||||||| || || Sbjct 32901 ACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACC 32960 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| |||||||| |||||| || || || || | | ||||| Sbjct 32961 TTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAG 33020 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAAC 480760 ||| || || || ||||| | |||||| || Sbjct 33021 GGTGATGGTCTTTCCGGTCAAAGTCTTGAC 33050 >seq11 Length=285515 Score = 93.3 bits (102), Expect = 3e-13 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCA-AGCAACTAAAGATGCGGGAAGA 474802 ||||||| || || || ||||||||| |||| ||||| |||| | || ||||| || Sbjct 19126 TTACTGTACCTGCCTACTTTAATGATGCTCAGCGTCAGAGCACC-AAGGATGCTGGTCAG 19184 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || || ||||| |||||| | ||| | | || || || || || || || ||||| ||| Sbjct 19185 ATCGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTAT 19244 Query 474863 GGTCTTGATAAGAATTCTGACAAAG 474887 |||||||||||| | | ||||||| Sbjct 19245 GGTCTTGATAAGGAGACCGACAAAG 19269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268133388298064