Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq64 288 1e-72 seq13 93.3 5e-14 >seq64 Length=130623 Score = 288 bits (318), Expect = 1e-72 Identities = 1162/1802 (64%), Gaps = 39/1802 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| | || || || |||| || | ||||||| ||| | |||| || | Sbjct 42840 TACTTTGGCTTTAAGACTCTAGAGA-GATCATATCTTCTCAAACTCAACGGCAAGATCGT 42898 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || || ||| ||||| ||||| || || |||| || || || ||||||| Sbjct 42899 CGAGCGACCTCAGCACATGACTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGA 42958 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 || |||||||| ||| || |||||| |||| | | ||| ||||| |||| Sbjct 42959 GCGCGTTTTGGAGACCTACCACCTCATGTCCAGCAAGCTCT--TCACCCACGCCTCACCT 43016 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || |||||||| || ||||| || | ||| |||| ||| || || ||| || Sbjct 43017 ACACTCTTCAACGCCGGTACCCCCCAATGTCAGCTGTCTTCTTGTTTTCTAGTCGACATG 43076 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| ||| || |||||||||| | ||||| | | ||||| ||||| ||| Sbjct 43077 AAGGATGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAG 43136 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 |||||| ||||| || || || |||| | | || | ||| ||| Sbjct 43137 ATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCC 43196 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || |||||| ||| | || || ||||| |||||||| || || ||| ||| || Sbjct 43197 GGCACCAATGGTACATCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCC 43256 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCG-CAAGGG-----GTCCATC-GCGGTCTACTTGGA 75615 | || || | || ||||| | |||| | || ||| || ||||| | || Sbjct 43257 AGATACGTTGACCA----GGGCGGCAACAAGCGACCTGGTGCATTTGCCATCTACCTCGA 43312 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 || ||||| || || | | || || ||||| || ||| ||||| || | ||||| Sbjct 43313 GCCTTGGCACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCATGGCAAGGAAGA 43372 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 || | | |||||||| | |||||||| ||||| || ||||||||||| || Sbjct 43373 AAACCGTGCTCGCGATCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGT 43432 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-G 75794 || || ||| | ||| |||| | ||||| || || || || || | || | Sbjct 43433 CGAAAAGAATGGAGATTGGACTCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTG 43492 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATG 75854 | ||| ||||||||||| || |||||| |||||||| ||||| | | | Sbjct 43493 CTATGGC-GAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGCA 43551 Query 75855 CGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 |||| | | ||| | || | | ||| | | || ||| | || ||||| || || || Sbjct 43552 AGACTATTCGTGCC-CAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGGGC 43610 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 | || | |||||| ||||||||||| || |||| ||||| ||||| ||||| ||||| Sbjct 43611 AACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGA 43670 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || || ||||| || || |||||||| || | |||||| | |||||| Sbjct 43671 ACCATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTT 43730 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC-AATGAAGAGACTCGCAC 76092 ||||||||||| ||||| || | |||||||| | ||| | | | ||| || Sbjct 43731 GCTGTTTGCAACTTGGCCTCTCTTGCCCTTCCTGCCTTCGTCGACTACAAAGA-AGGCCG 43789 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | || | | || || || || |||| | | || | || || ||| | Sbjct 43790 CTACGACTTCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGAT 43849 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 |||||| || ||| ||| ||||| || || || || |||||||| |||| Sbjct 43850 CATTGATGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACC 43909 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT-TTGTGCCGCTACGCATTTG 76271 || ||| | |||||||| ||||| || || | ||| || | || ||| | || | Sbjct 43910 CATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTG-CGCATGCCCTTCG 43968 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | || || ||| ||| | || | ||||| || ||||| || ||||| ||| Sbjct 43969 AGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCCC 44028 Query 76332 TGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTC 76391 || || | ||| |||| ||| ||||| |||| || || |||| |||| Sbjct 44029 TGACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTC 44088 Query 76392 CCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCA--ACTA 76449 |||| || |||| | ||||| || || |||| |||| || || || || | | Sbjct 44089 CCGCCTCGGAAGGTATTCTTCAATTCGACATGT-GGAATGTCAAGCC-TTCTGAGTTGTG 44146 Query 76450 CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TG 76507 || ||||| ||| ||||| | ||||||||| | ||| |||| ||| || || || Sbjct 44147 GGAGTGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAAC--TCGTTGCTG 44204 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || ||||| || ||||||||| | ||||| ||||||| ||||| |||||||| Sbjct 44205 CTCGCTCCCATGCCCACCGCCTCCACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAG 44264 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 |||||||| | ||||| |||| | | | | | || ||||| || | |||||| Sbjct 44265 CCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAAC 44324 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687 ||| |||| || ||| | || ||||||||||| | | |||||| | | | Sbjct 44325 CCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTCTGGTCTGATGCCATGAAGAACCGC 44384 Query 76688 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAAT 76747 || | | | ||||||||||| || ||| | |||| || | || |||||| | Sbjct 44385 ATCATTGCCGAGAACGGTTCCATTCAGAACATCCCCAATATACCCGCCGACATCAAGGCT 44444 Query 76748 CTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGT 76807 |||||| || || ||||| || | |||| || | |||||||| ||||| Sbjct 44445 CTCTACAAGACCGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGC 44504 Query 76808 GGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGT 76865 ||| ||| || || | |||| ||| | || | |||| | ||| || ||| Sbjct 44505 GGTGCCTTTATCGACC--AGTCCCAGTCGCTCAACGTCCACATGAAGGATCCTACTATGG 44562 Query 76866 CCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTAC 76924 |||| || | |||||||| | || || ||||| ||| ||||| || || |||||| Sbjct 44563 GCAAGATCACCTCTATGCACTTTGCTGGC-TGGAAGTTGGGTCTCAAGACGGGCATGTAC 44621 Query 76925 TA 76926 || Sbjct 44622 TA 44623 >seq13 Length=282089 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||| ||||| | | || || || |||||||| ||||||||| ||| | || Sbjct 96899 CTTCGCCCAGCGCTTGGTGGCTTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGTGCCTT 96958 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 | | || | ||| | |||||||| ||||| ||||| ||||| |||||| ||||| Sbjct 96959 TGCCTCGATATTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAATGA 97018 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 |||||| || || ||||||||| | ||| || ||||| Sbjct 97019 ACTTATCTCTCGTGATGAGGGTTTGCACACAGACTTTGC 97057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596561635795840