Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq199 116 5e-21 >seq199 Length=55906 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| |||||||| ||||| ||||||||| ||| Sbjct 32834 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACTATCACATTGGAAGTCGAATCTTCG 32775 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||| || |||||||| |||||||| || || || || Sbjct 32774 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 32715 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||| ||||||||||| ||| | ||||||| || || || ||| Sbjct 32714 CAGCGACTCATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 32655 Query 156003 AT 156004 || Sbjct 32654 AT 32653 Score = 109 bits (120), Expect = 8e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| |||||||| || ||||| ||| |||| Sbjct 32606 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACTTTGGAAGTGGAATCTTCT 32547 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| || || || || || || ||||| ||||| || || Sbjct 32546 GATACCATCGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 32487 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| || | |||| |||||| |||||||| ||||| Sbjct 32486 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGA 32452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731862229508800