Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq13 120 9e-22 seq21 100 8e-16 seq60 91.5 4e-13 >seq13 Length=282089 Score = 120 bits (132), Expect = 9e-22 Identities = 320/487 (66%), Gaps = 8/487 (2%) Strand=Plus/Plus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 || ||| | |||||||| ||| ||||| ||||||||| | | || || || || Sbjct 96852 AAAAAAGCAGACTGGGCCATTCGTTGGATTCAGGACAAGGATTCCAGCTTCGCCCAGCGC 96911 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTT 133570 | || ||||| |||| || |||||||| || ||||| ||||| || ||| || || Sbjct 96912 TTGGTGGCTTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATATTC 96971 Query 133571 TGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGG 133630 ||||| || ||||||||| | | || || || || ||||| |||||||| || | Sbjct 96972 TGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAATGAACTTATCTCTCGT 97031 Query 133631 GACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACTC 133690 || |||| | ||||| || ||||| | | | ||||| | | ||| | | | Sbjct 97032 GATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCTTAAGCACCGAGCC 97091 Query 133691 AAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATC 133750 | ||||| | || | || || || | || || |||| |||||| || ||| | Sbjct 97092 AGCAAGAAAATTATCCAGGATATCATCACCGACGCTGTTGGGATTGAGCAAGAGTTTTTG 97151 Query 133751 AATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATT 133810 | ||||||||||| | | | || ||||| | |||||| ||| |||||| Sbjct 97152 ACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTGATGAAGCAATATATT 97211 Query 133811 GAATTTGTAGCTGA---CAGATTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCC 133867 |||||||| || || | ||||| | || | ||| || ||| | ||| || Sbjct 97212 GAATTTGTCGCCGATCGCTTATTGGTTGCTC---TTGGTAACGAAAAGGTATACAAAACC 97268 Query 133868 GCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGAG 133927 ||||| || ||||| | ||||||| |||| | | | ||||| || ||||||||| Sbjct 97269 GCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACGAACTTCTTCGAG 97328 Query 133928 --GCGAG 133932 ||||| Sbjct 97329 AAGCGAG 97335 >seq21 Length=215256 Score = 100 bits (110), Expect = 8e-16 Identities = 219/324 (68%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 302497 CCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTA-TTTCTTACGGTCATATC 302555 || || ||||| || | |||||||||| | | || | | |||| || ||| ||| Sbjct 9081 CCATCTTCGCCATACAAGAACTGAATGATATC-TCCTAATGAGTTTCGCACAGTCCCATC 9139 Query 302556 ATAAC---CAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||| || ||| | ||||| | | ||||| | || |||||||| || ||||| Sbjct 9140 ATAACGTGCACTCAAA---TCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTATCCAGT 9196 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | || || ||||| || || || ||||| | || ||| |||| || |||||||| Sbjct 9197 TTCGGCAGTCTTGACAGCAGTGTCGATAAGACCTTCTCGTCCAGCCATGGCGTGGAAGAA 9256 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| || || || | | | ||||| | || |||||||||||||| ||||| Sbjct 9257 AAACTCGGTAGGAGTGAGACCACGGAGATAGGAGTTTTCGACGAAACCACGCGCTTCGGG 9316 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 || | ||| ||| ||||| || |||| || | || | |||| | || ||||| Sbjct 9317 GGAGTAGTCATCCTTTGTAAAATGCGGCAATGTTCGGTATTTGAAGCCAAACGGAATACG 9376 Query 302793 CTTTCCATCAACGTTCTGCTGTCC 302816 ||| || || || ||||||| || Sbjct 9377 CTTGCCTTCCACAATCTGCTGACC 9400 >seq60 Length=136323 Score = 91.5 bits (100), Expect = 4e-13 Identities = 329/509 (65%), Gaps = 12/509 (2%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||| |||||||| ||||| || ||||||||||| | Sbjct 31046 GCACCGTGGGCAATCATACAATCACGTTCCATTTCTCCGAATCGGAGACCACCATCTCTT 31105 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGA-GATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | ||| || ||||||| || || | |||| || ||| || | ||| || Sbjct 31106 GCGCGACCTTCCACAGGCTGCCGCGTCATGATT-TGCACAGGGCCACGAGCACGGGCGTG 31164 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA---- 251659 ||| || | ||||| || |||||| |||||| | | || |||| ||||| Sbjct 31165 GATCTTGTCGTCCACCATGTGACGGAGACGTTGGTAGTAGGTAGGGCCGAAGAAGACTTG 31224 Query 251660 TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 ||| | || | || ||||| | |||| ||||| | ||| ||| | || | Sbjct 31225 TGCCC----TCAACTTCTTCCCAGTGTGGCCGTTGTACATGATTTCAAATCCTCTCGACT 31280 Query 251720 CATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGG 251779 || || | || | ||| | || | | | | | ||| | | ||| | Sbjct 31281 GGTAGCCGTGCTTGCGCAGCAGTTCAGACACAGAGTCCACCGTGACATCAGTGAAAGGTG 31340 Query 251780 TGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAGTT 251839 || | || || | | |||| | | ||||||| | | | ||| |||| | Sbjct 31341 TGGCATCGCCCTCCATACCCTCCAGTGTAGACACTTTACTCAGCAAACACTCGATCAGGT 31400 Query 251840 GGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTC 251899 | || || ||||| || |||||| || || || |||||||||||||| || | | | Sbjct 31401 GAGCAATCGTCATTCGCGAGGGAATGGCGTGTGGGTTGATGATGATGTCTGGCGTGACAC 31460 Query 251900 CATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTGT 251958 | || ||| || ||||| |||| | || ||| || |||||||| |||||||| Sbjct 31461 CTTCCCGAGTAAACGGCATGTCCTCCT-GTCGGTAAGTGACACCAATAGTGCCCTTTTGC 31519 Query 251959 CCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| ||||| |||||| || ||||| Sbjct 31520 CCGTGGCGAGAGGCGAACTTGTCTCCAAT 31548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471797460015916