Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq64 132 6e-25 seq36 109 7e-18 seq24 109 7e-18 seq13 102 1e-15 seq8 89.7 6e-12 seq21 86.0 8e-11 >seq64 Length=130623 Score = 132 bits (146), Expect = 6e-25 Identities = 219/316 (69%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| ||||| | || |||| ||| ||||| || |||||||| | || |||||| Sbjct 43274 GCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTT 43215 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| || |||||||| || | ||| | ||||| || || | ||| || || Sbjct 43214 GGATGTACCATTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA 43155 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||| || || ||| ||||||||| | || || ||||| ||||||||||| || Sbjct 43154 GCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 43095 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || ||| |||||||||| || ||||| || || || || || | || Sbjct 43094 GTCAATGCTGTCATCCTTCATGTCGACTAGAAAACAAGAAGACAGCTGACATTGGGGGGT 43035 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 |||||||||||||| || || | || |||||| | || | |||||| || ||| Sbjct 43034 ACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTA 42975 Query 1630362 GGTGGCGAGCACGCGC 1630377 ||| | | |||||| Sbjct 42974 GGTCTCCAAAACGCGC 42959 >seq36 Length=176411 Score = 109 bits (120), Expect = 7e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||| || || || || ||| |||| |||||| | ||||||||||||| Sbjct 35943 CCAACTACCTCGACATTAAACCCCTACTTGATGTTGGCTGCAAGACGGTGGCCAACATGA 35884 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 | ||||| ||||| || || || || |||||||| || ||||||| Sbjct 35883 TTAAGGGAAAGTCACCTGAAGAAATTCGCAAGACTTTCAACATCA 35839 >seq24 Length=204198 Score = 109 bits (120), Expect = 7e-18 Identities = 255/379 (67%), Gaps = 12/379 (3%) Strand=Plus/Minus Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCG--CCGTGCATGCCACTGGCCGAGGCCGACATC 18177 |||| ||||||||||||| | |||| ||| | |||| || | ||| | ||||| Sbjct 78403 CGTCTCCTGCATCATCGACAAC-TGCCCTCCCGGTCTTGCC-CTCGTCGAAGATGACATT 78346 Query 18178 CAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAG 18237 ||||| ||| | | || ||||| ||||||||| || | | || || |||||||| Sbjct 78345 CAGCCGCAGCTCAACCGCCGCCGGCCGGGCCAGTCGGCCATAACGACACCCCGCAACGAA 78286 Query 18238 CCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTC 18297 || |||| |||||| || ||||| ||| |||| || || ||| ||||| | Sbjct 78285 AAAGACAAGGTCACCATCCACTCTGGCACCGAGTTCGGCAAGACCCTAGGCACGCCCATT 78226 Query 18298 GGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG-- 18355 ||| || ||||| ||||| |||||| ||||| ||||| | | | Sbjct 78225 TTGCTCACGGTCCCCAACGAAGACCAACGGCCCAAAGACTACGGCGACAAGACGATCGAT 78166 Query 18356 ---TGCCGCGGCCCTCA--CACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGC 18410 | || | |||| || |||||||||| || || | | |||||||||| ||||| Sbjct 78165 CTCTACCCCCGCCC-CAGCCACGCCGACTGGACATATCTCGAAAAGTACGGCACAAAGGC 78107 Query 18411 GTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 || ||||| ||| || ||||||||||| || ||||| ||||||||||| Sbjct 78106 CAGCTCCGGCGGCGGCAGGAGCAGCGCCCGCGAGACAATCGCCCGCGTGGCCGCCGGCGC 78047 Query 18471 GGTCGCCGAGAAATGGCTC 18489 |||||||| || |||||| Sbjct 78046 CGTCGCCGATAAGTGGCTC 78028 Score = 102 bits (112), Expect = 1e-15 Identities = 118/155 (76%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 19040 CCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCT 19099 |||| | ||||||| ||||||||| ||||| ||||| ||||||| || | || || Sbjct 77815 CCAACACGACAGCACCGGCGGCACCGTGACCTGCGTCATCCGCAACGCCCCCTCTGGTCT 77756 Query 19100 CGGCGAGCCGTGC-TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCC 19158 ||||||||| ||| || || ||| |||| ||| ||| ||||| ||||| || |||| Sbjct 77755 CGGCGAGCC-TGCGTTCGATAAGCTCGAAGCCCTCATCGGGCACGCTATGCTTTCCATCC 77697 Query 19159 CGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTT 19193 | ||| ||||||| ||||| || ||| ||||||| Sbjct 77696 CCGCCGCCAAGGGCTTCGAAATCGGC-TCGGGTTT 77663 >seq13 Length=282089 Score = 102 bits (112), Expect = 1e-15 Identities = 168/241 (70%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || || ||| |||||| ||||| |||||||| | | || || |||||| Sbjct 97345 TATTCTCCAACTCGCTTCTCGAAGAAGTTCGTCTTGCCACCCAAGGAAATGTTCTCCATG 97286 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||| ||||||| || ||||| ||||||| || || | | | | ||| Sbjct 97285 AAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGAGCAACCAATAAGCGA 97226 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 ||||||||||| || || || || ||| || |||||||||||| | ||| || | Sbjct 97225 TCGGCGACAAATTCAATATATTGCTTCATCAGTGTGGCGTTCATGCCTAGGAGAGCACAC 97166 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 ||||| | |||| ||| |||||||| ||| ||| | || || ||| |||||| | |||| Sbjct 97165 GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATCCCAACAGCGTCGGTGATGATAT-CCTG 97107 Query 868940 G 868940 | Sbjct 97106 G 97106 >seq8 Length=315942 Score = 89.7 bits (98), Expect = 6e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 344181 GGTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACGTCTGACGAGGC 344240 ||| ||||||||||| ||||| |||||||| || ||||| || |||||| || | Sbjct 218734 GGTTGCCTTCCCCACAGAGACAGTCTACGGTCTGGGCGCGGATGCCACGAGGAGCGCATC 218793 Query 344241 CGTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCACGT 344300 ||| | |||||| |||| |||||| || || || |||||||| ||||||| ||||| Sbjct 218794 GGTGAAGGGCATCTACGAGGCCAAGGGGCGGCCATCAGACAACCCGCTCATTGTTCACGT 218853 Query 344301 GGCC 344304 | || Sbjct 218854 GTCC 218857 >seq21 Length=215256 Score = 86.0 bits (94), Expect = 8e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCA-CAAGGTGGTGCCCATGCC 507696 ||||| ||||| ||| |||||| || |||||| | || | | | ||| | ||||| Sbjct 10375 AACCGTCAGCCCTCGTTGCACAAGGAGTCCATGATGGGTCATCGTGTTCGTGTC-ATGCC 10317 Query 507697 CGGGCGCACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGG 507756 | ||| | || || ||||| |||| || ||||||||||||| || || || Sbjct 10316 CTACTCTACCTTCCGCTTGAACCTTTCCGTTACTTCACCCTACAACGCCGATTTCGATGG 10257 Query 507757 CGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGT 507807 |||||||||||| ||||||| ||||| |||||| | |||| || ||||| Sbjct 10256 TGACGAGATGAACTTGCACGTTCCCCAATCCGAGGAGACGCGTGCGGAGGT 10206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107051554918556