Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq64 219 4e-52 seq199 104 2e-17 >seq64 Length=130623 Score = 219 bits (242), Expect = 4e-52 Identities = 1065/1675 (64%), Gaps = 58/1675 (3%) Strand=Plus/Minus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATAT-GTCGCGGTATTGTTGCAATATTTTG 138416 |||||||| ||||||||||| ||| | || | | || ||||| | | || || || Sbjct 44467 ATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCG-GGTATATTGGGGATGTTCTG 44409 Query 138417 AATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT 138476 |||| ||||| | ||||||||||| || ||||| |||| | ||| || | Sbjct 44408 AATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAGAGACCCATATC 44349 Query 138477 GATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACG 138536 || | || || | || | ||| | |||||| |||||||| ||||| || || || Sbjct 44348 GACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCG 44289 Query 138537 AACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGT 138596 |||||||||| ||| | |||||||| | || ||||| |||||||| || | || Sbjct 44288 CTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGT 44229 Query 138597 GGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCG 138656 || ||||| |||||| || | || | || || || | |||||| |||||| | Sbjct 44228 GGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCTG 44169 Query 138657 TTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 ||||| || ||| |||||||| || ||| || |||||||| ||| | || Sbjct 44168 CTCCTTCAGATTGTCCCACTCCCACAACTCAGAAGGCTTGACATTCCACATGTCGAATTG 44109 Query 138717 TA----ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTT 138772 | || |||| | |||||| ||| | | | | | ||| || ||||| Sbjct 44108 AAGAATACCTTCCGAG----GCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTT 44053 Query 138773 GCGCCAACTC----GTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGC 138828 |||| ||| | ||| | || ||| | | ||| || || ||| |||||| Sbjct 44052 TGGCCAGCTCAAGAGAGGCTGTC----AGGGCAGCGTGGTAGATGGTCTCGAAGATCTGC 43997 Query 138829 TGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAAC-GCGTC 138887 | |||||| |||||||||| |||| | |||||||| || | | ||| ||||| Sbjct 43996 TTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTC 43938 Query 138888 GGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG- 138946 ||| || || || || || || |||| || ||||| |||| || ||| ||||| Sbjct 43937 GGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTT----GCTGTTGCGAG 43882 Query 138947 ---CTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCT 139003 | || || || |||| ||| ||||| ||||| ||||| | || || |||||||| | Sbjct 43881 CCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACGACCACTT 43822 Query 139004 TAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCG 139062 ||| | | | | | | | || ||||| ||| | |||| |||||||| | | Sbjct 43821 GAGTGACCT-CGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGCA 43763 Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTG 139122 || | || | ||||| | |||||| || || || || || ||| | | | Sbjct 43762 GGAAG------GGCAAGA---GAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAG 43712 Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || || | || || | |||| || | || || || | || | || ||| Sbjct 43711 TACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTG 43652 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 || |||| ||| || ||||| ||||| |||||| | || |||| ||||| || | | Sbjct 43651 CTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGAC 43592 Query 139243 TCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCGTC 139298 || | ||| | | | | | | || | || ||| || | | | || Sbjct 43591 TCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCC----ACGGCCCTC 43536 Query 139299 GCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCG 139358 ||||| ||||| |||||||| | || || || || ||| |||| || | | Sbjct 43535 ACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGG 43476 Query 139359 ACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAG 139418 |||| || ||||||||||| | ||| | || ||| | ||||||| ||||||| || Sbjct 43475 GCACTCGTTGGGACACATGAGAGTCCAATCTCCATTCTTTTCGACGCGCTTCATGAAGAG 43416 Query 139419 ATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTT 139478 ||| || ||||||| ||| | | | |||||| || || |||||| ||||| | Sbjct 43415 ATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCC-TTGCCATGGT 43357 Query 139479 ACGTT-TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCA 139537 | || || | ||| || ||||| ||||| |||||||| || || || |||||||| | Sbjct 43356 TCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAA 43297 Query 139538 TTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGC 139594 ||| || | | ||||| || || || |||| || ||| || ||||| || | Sbjct 43296 ATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACAC 43237 Query 139595 GCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGCG 139652 | | ||| || | ||| | | ||| || ||||||| ||| ||| | | | Sbjct 43236 GAAGCATGGGAATGATGCCGTTGGATGTACCATTGGTGC--CGGCAATGTAAGAGCCGGT 43179 Query 139653 AGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA 139712 ||| |||| | || || || | |||||| || || | | ||||| || | | || Sbjct 43178 AGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACA 43119 Query 139713 -ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771 || | | || ||||| ||||| |||||||| |||| ||| ||| ||||| | Sbjct 43118 GGTCTTG-AGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGACTAGAAAAC 43060 Query 139772 ATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGA 139831 | || || || || | | || ||||| || || ||||| ||||| |||| Sbjct 43059 AAGAAGACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA 43000 Query 139832 ACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGA 139891 | | | | ||||| | | ||| || || | ||| | |||| | ||| | Sbjct 42999 AGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTCCCCAAA 42940 Query 139892 TACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttt 139951 ||||||| | || ||||| ||| || || || ||| | | | ||| | || || Sbjct 42939 TACCGACCGCAACGCGCATAGTCATGTGCTGAGGTCGCTCGACGATCTTGCCGTTGAGTT 42880 Query 139952 ttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 | ||||| ||||||| ||||| |||||||||| ||||||||| || Sbjct 42879 TGAGAAGATATGATCTCTCTAGAGTCTTAAAGCCAAAGTATTGATAGTTGAAGTC 42825 >seq199 Length=55906 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || |||||||| || | ||||| ||| | | Sbjct 32834 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACTATCACATTGGAAGTCGAATCTTCG 32775 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||| ||||| || ||||| || || || || || Sbjct 32774 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 32715 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||||||||| ||||| |||||| ||| |||| || || || Sbjct 32714 CAGCGACTCATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 32655 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || | || ||||| |||| |||| || || Sbjct 32654 ATTCAGAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTGCGAGGTGG 32608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449891593867040