Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq13 109 9e-18 seq36 104 4e-16 seq64 100 5e-15 seq193 86.0 1e-10 >seq13 Length=282089 Score = 109 bits (120), Expect = 9e-18 Identities = 184/259 (71%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || || ||||| ||| || || || ||| |||||| ||||| |||||||| | | Sbjct 97360 ACTCCAGCCTTCTGATATTCTCCAACTCGCTTCTCGAAGAAGTTCGTCTTGCCACCCAAG 97301 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GA 794010 || || |||||| | ||| |||||||| || ||| ||| ||| || || Sbjct 97300 GAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGA 97241 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 || || ||| || || |||||||| |||||||| || || ||| || | |||||||| Sbjct 97240 GCAAC-CAATAAG-CGATCGGCGACAAATTCAATATATTGCTTCATCAGTGTGGCGTTCA 97183 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||| | ||| || ||| ||||| | |||| | | |||||||| ||| ||| | || || Sbjct 97182 TGCCTAGGAGAGCACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATCCCAACAGCG 97124 Query 794130 TCGATGATGATCTGCCTGG 794148 ||| ||||||| | ||||| Sbjct 97123 TCGGTGATGATAT-CCTGG 97106 >seq36 Length=176411 Score = 104 bits (114), Expect = 4e-16 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||| || ||||| || ||| | || |||||||| ||||||||| | | Sbjct 35943 CCAACTACCTCGACATTAAACCCCTACTTGATGTTGGCTGCAAGACGGTGGCCAACATGA 35884 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | ||||| ||||| || || || || |||||||| || ||||||| Sbjct 35883 TTAAGGGAAAGTCACCTGAAGAAATTCGCAAGACTTTCAACATCA 35839 >seq64 Length=130623 Score = 100 bits (110), Expect = 5e-15 Identities = 283/438 (65%), Gaps = 12/438 (3%) Strand=Plus/Minus Query 2071581 GACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 || ||| ||||||||||||| | || |||| |||||||||| ||||||||| | Sbjct 43703 GATCTCCGTGCACAGGTTGGAG--CTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTT 43646 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| ||| ||||||| |||||| |||| ||||| ||| |||| | | || | Sbjct 43645 CTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGG 43586 Query 2071699 ATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCCCTNNNNNNN 2071754 |||| |||| | || |||||| | || ||| ||||||| Sbjct 43585 ATGGAGTACCAGA----GCTTCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTC 43530 Query 2071755 NNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTC 2071814 |||| || ||||| | |||| | ||| || |||||| || ||| Sbjct 43529 ATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTC 43470 Query 2071815 GGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCA 2071874 | || || | ||| | ||| || || | | ||||| ||| || || || Sbjct 43469 GTTGGGACACATGAGAGTCCAATCTCCATTCTTTTCGACGCGCTTCATGAAGAGATCTGG 43410 Query 2071875 CGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTT 2071934 ||||||| | ||||||||||| || ||||| || |||||||| ||||||||| Sbjct 43409 GATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCTTGCCATGGTTCTTTCG 43350 Query 2071935 CAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 || || || |||| | | ||| |||||||| ||||| |||||| |||||| || || Sbjct 43349 CAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACC 43290 Query 2071995 CTTGCGCTTGCCGCCGCC 2072012 |||||| |||||| Sbjct 43289 AGGTCGCTTGTTGCCGCC 43272 >seq193 Length=57628 Score = 86.0 bits (94), Expect = 1e-10 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || |||||||||||||| || ||||| ||| | || ||||| || ||| Sbjct 30447 GTACTTGGTCACAGCCTTGGTACCCTCAGACACGGCATGCTTTGCAAGTTCACCAGGCAA 30506 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 ||||| ||| || | ||||||||| ||||| Sbjct 30507 GATCAAGCGAACAGAGGTCTGGATTTCGCG 30536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916132791968852