Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq199 113 4e-20 seq32 86.0 5e-12 >seq199 Length=55906 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||| || |||||||| || || | ||| || || Sbjct 32834 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACTATCACATTGGAAGTCGAATCTTCG 32775 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | ||||| |||||| ||||| |||||| | ||| || ||| Sbjct 32774 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 32715 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | ||| || || ||||| ||||| | | ||| || | |||||||| Sbjct 32714 CAGCGACTCATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 32655 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| ||||| |||| || | ||||||| || Sbjct 32654 ATTCAGAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTGCGAGGTGG 32608 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| || || || || || || ||||| | ||| ||| || Sbjct 32606 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACTTTGGAAGTGGAATCTTCT 32547 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || ||| |||||| || || || ||| | || || ||| Sbjct 32546 GATACCATCGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 32487 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||||||| ||| || || |||||||| |||| | || || ||||||||| Sbjct 32486 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 32427 Query 107736 ATTCAAAAGGA 107746 || || ||||| Sbjct 32426 ATCCAGAAGGA 32416 >seq32 Length=184707 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| |||||||| | || || || || || ||| | || |||| || Sbjct 81110 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 81169 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || || ||||| || || || ||| | ||| ||| Sbjct 81170 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 81229 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||||| | ||| ||||| ||||| ||||| | | || || |||||| Sbjct 81230 CAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 81289 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||| || ||||| ||||| || | |||| || || Sbjct 81290 AACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGG 81339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398871608119852