Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq64 246 3e-60 seq199 122 8e-23 seq32 118 1e-21 seq175 116 4e-21 seq13 91.5 1e-13 >seq64 Length=130623 Score = 246 bits (272), Expect = 3e-60 Identities = 993/1545 (64%), Gaps = 53/1545 (3%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| || || || || | || || ||| | || | |||| ||| | || Sbjct 44323 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 44264 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||| ||||| |||| ||| |||| ||| | || ||||||||| || | | Sbjct 44263 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGC 44204 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 |||| ||||||||| | |||| | | || || | ||||||| |||| ||||| Sbjct 44203 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAC 44144 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 | | || || | || |||||||||||| | || ||||| || ||||| | Sbjct 44143 AACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAG 44084 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCG-AGCGC 148558 |||| | | | ||| || || ||| | ||||| || || | || || || Sbjct 44083 CCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGC 44025 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTT---TC 148615 ||| ||| || |||||| || ||| |||||||| | | | | |||| || Sbjct 44024 AGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCT-CACGGGC--CTCGGGAGACTC 43968 Query 148616 GTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGG 148675 | | ||||| ||||| | ||| ||||||||||| ||||| || || || || ||||| Sbjct 43967 GAAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGG 43908 Query 148676 CCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGAT 148735 || ||| |||||| | ||| || ||| | || || |||||| || ||||| Sbjct 43907 TCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGAT 43848 Query 148736 CTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTAC-- 148793 ||||| || || || || ||||| | || | | | ||| | || ||||| Sbjct 43847 CTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCG 43788 Query 148794 -------TTGTCATCTACGATG-CATCGGTTCACGGCGATAGAGGCTAGATTGCACACGG 148845 |||| || |||| | || || | ||| | |||||| | ||||| || | Sbjct 43787 GCCTTCTTTGTAGTCGACGAAGGCA--GGA--AGGGCAAGAGAGGCCAAGTTGCAAACAG 43732 Query 148846 CCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG---CTGCATTTGA 148902 | |||||| ||||| | |||||| | |||||| | |||||| ||| |||| || Sbjct 43731 CAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGG 43672 Query 148903 TCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACG 148962 | |||| |||||| || |||||||| |||||||| || |||||||||||||| | | Sbjct 43671 TT---CCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGG 43615 Query 148963 GTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCGCA--- 149019 | ||| ||||| ||| | || | ||| | || | ||| || || | Sbjct 43614 GGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAG 43555 Query 149020 -CTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCT 149076 ||||| || || ||||| |||| || | ||| | |||| || ||| ||| Sbjct 43554 TCTTGCGGCCA----CGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCT 43501 Query 149077 CGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGT 149136 |||| |||||||| | || || ||||||| || || |||||||| | ||| | || | Sbjct 43500 CGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCCAT 43441 Query 149137 CCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCG 149196 | | ||||||||||| || ||||| || | ||| || || | ||| ||||| | Sbjct 43440 TCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAG 43381 Query 149197 CCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGT 149256 | | ||||| ||| ||| |||| | || | | || | ||| |||| Sbjct 43380 CACGGTTTTCTTCCTTGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGT 43321 Query 149257 GCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGT 149313 |||| ||||| | ||| | || | || || ||| |||||||||||||| |||| Sbjct 43320 GCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGT 43261 Query 149314 GGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAG 149373 | | ||||||| || || |||| ||| || ||||| ||| || || || | Sbjct 43260 ATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCATTGG 43201 Query 149374 TAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-G 149432 | | |||| | |||| || || | ||| ||||| | |||||| || || | Sbjct 43200 TGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAG 43141 Query 149433 CCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCG 149492 || | ||| ||||| || ||| ||| || |||||| || || |||||||| Sbjct 43140 CCAT-CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCA 43082 Query 149493 CGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAA---ACGCGTGCCGGCCGCG 149549 ||||||| | ||||| || || ||| || || | | || ||||| | Sbjct 43081 TCCTTCATGTCGACTAGAAAACAAGAAGACA---GCTGACATTGGGGGGTACCGGCGTTG 43025 Query 149550 AACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAG 149608 || | || || |||||| || || | || |||| ||| | | ||| | ||| | Sbjct 43024 AAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGG-ACATGAGGTGGTAGGTCTCCAA 42966 Query 149609 CACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGG 149668 ||||| || |||| || || || || | || |||||||| ||| ||||| || Sbjct 42965 AACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAGTCATGTGCTGAGG 42906 Query 149669 TCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCC 149728 |||||| | | ||| | |||||| | || | ||||| ||||| |||| Sbjct 42905 TCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCTAGAGTCTTAAAGCC 42846 Query 149729 AAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 |||||| | |||| ||||| | | ||| | ||||||||| ||| Sbjct 42845 AAAGTATTGATAGTTGAAGTCTCTGTCGTAGACAATGGCGGAGTC 42801 >seq199 Length=55906 Score = 122 bits (134), Expect = 8e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| || ||||| ||||| |||||||| || | ||| | | | ||||||||||| Sbjct 33161 TGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA-TCCTCGAGCTG 33219 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || || |||||||||||||| ||||| || |||||||| ||||| Sbjct 33220 CTTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCCTGAATCTT 33279 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | |||| ||||| | || ||| || |||| || | ||| |||||||| Sbjct 33280 CGACTTGACATTGTCAATAGTGTCAGAGGACTCGACCTCGAGAGTAATGGTCTTGCCGGT 33339 Query 133637 CAGAGTTTTTACGAAAATCTGCATGG 133662 || || || ||||| || ||||||| Sbjct 33340 GAGGGTCTTGACGAAGATTTGCATGG 33365 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | |||||||| Sbjct 32629 AAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCA-TCCTCGAG 32687 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | ||||| ||||||||||| || || ||||||||||| || || Sbjct 32688 CTGCTTCCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAAT 32747 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||| || | | || || || | |||| |||||||| Sbjct 32748 CTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAATGTGATAGTTTTGCC 32807 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || ||||| |||||||| Sbjct 32808 AGTCAAAGTCTTGACGAAGATCTGCAT 32834 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| |||||||| ||| | || | | | || || |||||||| || Sbjct 32866 GTGGATTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCA-TCTTCCAGCTGCTTACC 32924 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | |||||||| || |||||||| ||||||||||| ||||| ||| Sbjct 32925 AGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTCGACTT 32984 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| || ||| || || | ||||| ||| || ||||||| ||| Sbjct 32985 GACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGT 33044 Query 133643 TTTTAC 133648 || || Sbjct 33045 CTTGAC 33050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 || ||||| || ||||| |||| || |||| ||| || |||||||| || || || Sbjct 32416 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 32475 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || || |||||||||||||||||||| |||||||| ||||| |||| | Sbjct 32476 ATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGATTTGACATTG 32535 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | || || | | ||||| || | || | || || || |||| || || || Sbjct 32536 TCGATGGTATCAGAAGATTCCACTTCCAAAGTAATAGTCTTTCCAGTCAAGGTCTTGACA 32595 Query 133650 AAAATCTGCAT 133660 ||||| ||||| Sbjct 32596 AAAATTTGCAT 32606 >seq32 Length=184707 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| |||| || ||| | | | |||||||| Sbjct 81318 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAG 81260 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || || || |||||||| || || ||||| |||||||| ||| Sbjct 81259 CTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGAT 81200 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||||| | |||||| || | ||||| || || || Sbjct 81199 CTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCC 81140 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||||||||| Sbjct 81139 CGTGAGGGTTTTGACGAAAATCTGCAT 81113 >seq175 Length=62467 Score = 116 bits (128), Expect = 4e-21 Identities = 146/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || || ||| |||||| ||||||||||| ||| | || Sbjct 37697 TTCTGAATGTTGTAGTCGGACAGGGTTCGACC-GTCCTCAAGCTGCTTGCCAGCGAAGAT 37755 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||| || || ||||| |||||||| ||| || ||||| | || Sbjct 37756 CAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTC 37815 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 || |||||| | || ||| || || | ||||| ||| ||||| |||||||| || ||||| Sbjct 37816 AATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 37875 Query 133652 AATCTGCATGGCTTATT 133668 | ||| |||| |||| Sbjct 37876 A--CTGGATGGTGTATT 37890 >seq13 Length=282089 Score = 91.5 bits (100), Expect = 1e-13 Identities = 333/515 (65%), Gaps = 15/515 (3%) Strand=Plus/Minus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 || || || || || ||||| || ||||| || ||||| ||| |||||||| | ||| Sbjct 97345 TATTCTCCAACTCGCTTCTCGAAGAAGTTCGTCTTGCCACCCAAGGAAATGTTCTCCATG 97286 Query 120415 AACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGC--CCAACTGTA-CGAGCAGT 120471 || ||||| |||||| ||| | |||| | | | |||| | | | | | Sbjct 97285 AAATCGAAGGGGTTG---GCGGTTTTGTATACCTTTTCGTTACCAAGAGCAACCAATAAG 97229 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCG-CGTTCATGCCCAGCAACGC 120530 || || || ||||| ||||| || | ||| | || | |||||||||| || | || Sbjct 97228 CGATCGGCGACAAATTCAATATATTGCTTCATC-AGTGTGGCGTTCATGCCTAGGAGAGC 97170 Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 ||||| ||| || |||||||| | |||||| | || || || ||| || | Sbjct 97169 ACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATCCCAACAGCGTCGGTGATGATATC 97110 Query 120591 GAGCATAGTGTGGCCG--GGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCA 120648 | ||| | | | ||| || | |||||| || | |||| || ||| Sbjct 97109 CTGGATAATTTTCTTGCTGGCTCGGTGCTTAAGATGCGAGTGCA-----ACAGACATGCA 97055 Query 120649 AAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGC 120708 ||||| ||||||| ||||| || || || || || || || || || ||||||||| Sbjct 97054 AAGTCTGTGTGCAAACCCTCATCACGAGAGATAAGTTCATTAGAGAAGGTGAGGCCGGGC 96995 Query 120709 ATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCC 120768 || | || | |||||| ||||||| | ||||||| || ||||| | |||| Sbjct 96994 ATCAGACCACGCTTCTTGAGCCAGAATATCGAGGCAAAGGCACCGCTGAAGAAGATGCCC 96935 Query 120769 TCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCAC 120828 |||||| || || || |||| ||||| ||| || | | |||| | ||||| Sbjct 96934 TCCACGGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCCTGAATCCAA 96875 Query 120829 TTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||||||| || || ||||| || | ||| || Sbjct 96874 CGAATGGCCCAGTCTGCTTTTTTCCGGATGCAGGG 96840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414346332320