Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq199 96.9 2e-15 >seq199 Length=55906 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||| | ||| | |||||| || || || |||||||| ||| Sbjct 32379 ACCACCACGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCT 32438 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| |||| || |||||||||||||| | || ||||| || | || Sbjct 32439 CAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 32498 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || | || |||| ||| | ||| || ||||||| Sbjct 32499 GATGCCCTCCTTGTCCTGAATCTT-GGATTTGACATTGTCGATGGTATCAGAAGATTCCA 32557 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || || || || ||||| || |||||| Sbjct 32558 CTTCCAAAGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 32607 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/216 (71%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| || || || || ||||| |||||||| || || | || |||| || Sbjct 32860 TGAAGAGTGGATTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGC 32919 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || |||||||| ||||||||||| | || | |||||| ||||| ||| ||| Sbjct 32920 TTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTC 32979 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | |||| ||| | ||||||| || || || |||| ||||| || || || || Sbjct 32980 -GACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGT 33038 Query 33726 TAACGTTTTTACAAAGATCTGCAT--AGTTGGTGTG 33759 || || || |||| | ||||| |||| ||||| Sbjct 33039 CAAAGTCTTGACAACTGT-TGCATAGAGTTAGTGTG 33073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328699721506560