Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq199 113 1e-19 >seq199 Length=55906 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || ||||| ||||| |||||||| ||| ||| || Sbjct 32831 CAGATCTTCGTCAAGACTTTGACTGGCAAAACTATCACATTGGAAGTCGAATCTTCGGAT 32772 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| || ||||| ||| || ||| || Sbjct 32771 ACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAGCAG 32712 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| ||||| ||||| |||||| | || ||||| | |||||| |||| ||||| | Sbjct 32711 CGACTCATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAATATT 32652 Query 206353 CAGAAAGAGTCTACT 206367 ||||| ||||||||| Sbjct 32651 CAGAAGGAGTCTACT 32637 Score = 96.9 bits (106), Expect = 8e-15 Identities = 132/183 (72%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || ||||| || || ||||||||||||||| |||||| || | Sbjct 32598 TTTTGTCAAGACCTTGACTGGAAAGACTATTACTTTGGAAGTGGAATCTTCTGATACCAT 32539 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || || |||||||| || || || || || || ||| ||| |||| Sbjct 32538 CGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGACT 32479 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || |||||||||||| ||||||| || | || || ||| |||||| ||||||| Sbjct 32478 TATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAACATCCAGAA 32419 Query 206358 AGA 206360 || Sbjct 32418 GGA 32416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181804628259628