Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq64 214 2e-50 seq32 95.1 1e-14 >seq64 Length=130623 Score = 214 bits (236), Expect = 2e-50 Identities = 993/1543 (64%), Gaps = 55/1543 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || || || || |||| ||||| | | || | ||| ||| | ||| Sbjct 44323 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 44264 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| ||||||| || || | ||||| | |||| ||||| |||||| || | | Sbjct 44263 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGC 44204 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || || || | ||||| | | ||| | ||||||| | | | ||| |||||| Sbjct 44203 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAC 44144 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGGAC 147130 | | || ||| | || |||||||||||| | || || | ||| ||| ||||||| Sbjct 44143 AACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGA--GGCGGGAG 44086 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCG-AG 147188 ||| ||| |||| |||| || | || || | ||| ||| || | || || Sbjct 44085 AGCCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAG 44028 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG--ACGGTCGCTTCTTCGCTC 147246 || | | ||| ||||| ||| ||| || ||||| || |||| || || | Sbjct 44027 GGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGG--GCCTCGGGAGAC 43970 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| | ||||| |||||| | ||| || ||||| | |||||| | ||| || ||||| Sbjct 43969 TCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATG 43910 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAA 147364 |||||||| ||||||| | || || || ||||| || |||||| ||||| Sbjct 43909 GGTCGATGTCGCATGTTGCTGT--TGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAA 43852 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 | ||||||||||||||||| || || |||| ||| | | ||| |||| ||| || | Sbjct 43851 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGT 43792 Query 147425 AAGTCCCGTCTTCG----ACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480 | || |||| | ||| | ||| || | ||| | ||| |||| ||||| Sbjct 43791 AGCGGCCTTCTTTGTAGTCGACGAAGGCA--GG--AAGGGCAAGAGAGGCCAAGTTGCAA 43736 Query 147481 ACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTT 147540 || || ||| || | | | | ||||| | ||| || | |||||||||| || Sbjct 43735 ACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGA 43676 Query 147541 ATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTAC 147600 ||| ||||| || | ||| ||||| || | ||||| || || ||| | ||||| | Sbjct 43675 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAG 43616 Query 147601 GGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACC 147660 || ||| || ||| || | || | ||| | || | ||| || || | Sbjct 43615 GGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA 43556 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 || || |||||||| || ||| |||||| | ||||||||| ||||| Sbjct 43555 GTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCA 43496 Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGT-CGTCCGC 147779 |||||||| || ||||| || |||| | |||||||| || | ||| || | | | | Sbjct 43495 TAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCA-ATCTCCATTCTT 43437 Query 147780 GTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG----CG 147835 | ||||| ||| || ||||| || | |||||| || | |||||||| || Sbjct 43436 TTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACG 43377 Query 147836 CTTTGCAATCCTCGGCGCCCATGTTGCGTT-TCAAATTAAGCACGCTATAGATGTCGGCG 147894 ||| | |||| | ||||| | | || ||||| ||| | | | | | ||| ||| Sbjct 43376 GTTTTC-TTCCTTG----CCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCG 43322 Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACA 147951 ||||| || || | ||||| ||| | ||||| ||| || ||||||||||| || Sbjct 43321 TGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACG 43262 Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011 | | | ||||||| || || || | |||||| | |||| | | || || ||| Sbjct 43261 TATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCATTG 43202 Query 148012 GTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC- 148070 ||| || | |||| || || | ||| ||||| | ||| || || || Sbjct 43201 GTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCA 43142 Query 148071 GCCGTACTTTGA---TATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCT 148127 ||| | ||| || |||||| | | | | |||| |||||| ||||| ||||| Sbjct 43141 GCCAT-CTTGGAGATCATGGCACAGGTCTTG-AGAGTGTC--GTAGATACCGTCAATGCT 43086 Query 148128 GTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG- 148186 ||| | || | | | | | |||||| ||| ||| || | | | | | ||| || Sbjct 43085 GTCATCCTTCATGTCGACTAGAAAACAAGAAGACAGCTG-ACATTGGGGGGTACCGGCGT 43027 Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTC 148244 ||| || || || ||||| || || | || | || ||| | | | || ||||| Sbjct 43026 TGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGA--CATGAGGTGGTAGGTCTC 42969 Query 148245 AATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTG 148304 | | || || |||| ||| || ||| || | ||| |||||||| ||||||||| Sbjct 42968 CAAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAGTCATGTGCTG 42909 Query 148305 TGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGT 148363 ||||| ||| | | |||| ||||| |||||||||||| | || || || || Sbjct 42908 AGGTCGCTCGACGATCTTG-CCGTTGAGTTTGAGAAGATATGATCTCTCTAGAGTCTTAA 42850 Query 148364 AACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 | |||||||| | || | || ||| ||||| | ||||| Sbjct 42849 AGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACAATGGC 42807 >seq32 Length=184707 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| ||||| || | | | ||| || || |||||||||||||||| ||| Sbjct 81334 ACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 81275 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| ||||| | | |||| || || || || || || || ||||| Sbjct 81274 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCC 81215 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 81214 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 81155 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || ||||| | |||||||||||| Sbjct 81154 GGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 81113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476604837240480