Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15]
1,068 sequences; 36,169,561 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq64 214 2e-50
seq32 95.1 1e-14
>seq64
Length=130623
Score = 214 bits (236), Expect = 2e-50
Identities = 993/1543 (64%), Gaps = 55/1543 (4%)
Strand=Plus/Minus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| || || || || || |||| ||||| | | || | ||| ||| | |||
Sbjct 44323 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 44264
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
||||| ||||||| || || | ||||| | |||| ||||| |||||| || | |
Sbjct 44263 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGC 44204
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| ||| || || || | ||||| | | ||| | ||||||| | | | ||| ||||||
Sbjct 44203 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAC 44144
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGGAC 147130
| | || ||| | || |||||||||||| | || || | ||| ||| |||||||
Sbjct 44143 AACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGA--GGCGGGAG 44086
Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCG-AG 147188
||| ||| |||| |||| || | || || | ||| ||| || | || ||
Sbjct 44085 AGCCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAG 44028
Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG--ACGGTCGCTTCTTCGCTC 147246
|| | | ||| ||||| ||| ||| || ||||| || |||| || || |
Sbjct 44027 GGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGG--GCCTCGGGAGAC 43970
Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306
||| | ||||| |||||| | ||| || ||||| | |||||| | ||| || |||||
Sbjct 43969 TCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATG 43910
Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAA 147364
|||||||| ||||||| | || || || ||||| || |||||| |||||
Sbjct 43909 GGTCGATGTCGCATGTTGCTGT--TGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAA 43852
Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424
| ||||||||||||||||| || || |||| ||| | | ||| |||| ||| || |
Sbjct 43851 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGT 43792
Query 147425 AAGTCCCGTCTTCG----ACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480
| || |||| | ||| | ||| || | ||| | ||| |||| |||||
Sbjct 43791 AGCGGCCTTCTTTGTAGTCGACGAAGGCA--GG--AAGGGCAAGAGAGGCCAAGTTGCAA 43736
Query 147481 ACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTT 147540
|| || ||| || | | | | ||||| | ||| || | |||||||||| ||
Sbjct 43735 ACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGA 43676
Query 147541 ATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTAC 147600
||| ||||| || | ||| ||||| || | ||||| || || ||| | ||||| |
Sbjct 43675 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAG 43616
Query 147601 GGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACC 147660
|| ||| || ||| || | || | ||| | || | ||| || || |
Sbjct 43615 GGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA 43556
Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720
|| || |||||||| || ||| |||||| | ||||||||| |||||
Sbjct 43555 GTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCA 43496
Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGT-CGTCCGC 147779
|||||||| || ||||| || |||| | |||||||| || | ||| || | | | |
Sbjct 43495 TAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCA-ATCTCCATTCTT 43437
Query 147780 GTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG----CG 147835
| ||||| ||| || ||||| || | |||||| || | |||||||| ||
Sbjct 43436 TTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACG 43377
Query 147836 CTTTGCAATCCTCGGCGCCCATGTTGCGTT-TCAAATTAAGCACGCTATAGATGTCGGCG 147894
||| | |||| | ||||| | | || ||||| ||| | | | | | ||| |||
Sbjct 43376 GTTTTC-TTCCTTG----CCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCG 43322
Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACA 147951
||||| || || | ||||| ||| | ||||| ||| || ||||||||||| ||
Sbjct 43321 TGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACG 43262
Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011
| | | ||||||| || || || | |||||| | |||| | | || || |||
Sbjct 43261 TATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCATTG 43202
Query 148012 GTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC- 148070
||| || | |||| || || | ||| ||||| | ||| || || ||
Sbjct 43201 GTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCA 43142
Query 148071 GCCGTACTTTGA---TATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCT 148127
||| | ||| || |||||| | | | | |||| |||||| ||||| |||||
Sbjct 43141 GCCAT-CTTGGAGATCATGGCACAGGTCTTG-AGAGTGTC--GTAGATACCGTCAATGCT 43086
Query 148128 GTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG- 148186
||| | || | | | | | |||||| ||| ||| || | | | | | ||| ||
Sbjct 43085 GTCATCCTTCATGTCGACTAGAAAACAAGAAGACAGCTG-ACATTGGGGGGTACCGGCGT 43027
Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTC 148244
||| || || || ||||| || || | || | || ||| | | | || |||||
Sbjct 43026 TGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGA--CATGAGGTGGTAGGTCTC 42969
Query 148245 AATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTG 148304
| | || || |||| ||| || ||| || | ||| |||||||| |||||||||
Sbjct 42968 CAAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAGTCATGTGCTG 42909
Query 148305 TGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGT 148363
||||| ||| | | |||| ||||| |||||||||||| | || || || ||
Sbjct 42908 AGGTCGCTCGACGATCTTG-CCGTTGAGTTTGAGAAGATATGATCTCTCTAGAGTCTTAA 42850
Query 148364 AACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406
| |||||||| | || | || ||| ||||| | |||||
Sbjct 42849 AGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACAATGGC 42807
>seq32
Length=184707
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||||| ||||| || | | | ||| || || |||||||||||||||| |||
Sbjct 81334 ACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 81275
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||| |||||||| ||||| | | |||| || || || || || || || |||||
Sbjct 81274 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCC 81215
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || || || | | || | || |||| | |||||| || |
Sbjct 81214 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 81155
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||| || || || || ||||| | ||||||||||||
Sbjct 81154 GGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 81113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476604837240480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |