Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq64 104 3e-16 seq13 102 1e-15 >seq64 Length=130623 Score = 104 bits (114), Expect = 3e-16 Identities = 207/304 (68%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGC 259941 |||||| | |||||| ||||| | | |||||| || | || || ||||| || || Sbjct 42972 ACCTACCACCTCATGTC-CAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAACGC 43030 Query 259942 CGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGAT 260001 ||| || || | ||| || || || ||||| | |||||||||| || || Sbjct 43031 CGGTACCCCCCAATGTCAGCTGTCTTCTTGTTTTCTAGTCGACATGAAGGATGACAGCAT 43090 Query 260002 CGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCAT 260061 || || ||||| ||||| |||||| || || | ||||||||| ||| || || || Sbjct 43091 TGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTAT 43150 Query 260062 CGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCA 260121 ||| || || ||| | || || | ||| | ||| | || |||||||| || Sbjct 43151 CGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAATGGTAC 43210 Query 260122 GTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||||||| | | ||||||||||| || || ||| |||| || | ||||| ||||| Sbjct 43211 ATCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTTGACCA 43270 Query 260182 GTGC 260185 | || Sbjct 43271 GGGC 43274 Score = 91.5 bits (100), Expect = 2e-12 Identities = 173/250 (69%), Gaps = 16/250 (6%) Strand=Plus/Plus Query 263171 CCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATA 263230 |||| |||||||||||| ||||||||| |||||| | | | || || | | Sbjct 44431 CCGACATCAAGGCTCTCTACAAGACCGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGA 44490 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 |||| ||||| |||| ||| | |||||||| ||||||||||||| | || | | Sbjct 44491 TGGCCGCCGATCGCGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACGTCCACATGAAGG 44550 Query 263291 ACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGC-----GTCGCGG 263342 | || || || | ||| |||| || |||||| | ||| |||| || | || Sbjct 44551 ATCCTACTATGGGCAAGA---TCACCTCTATGCAC---TTTGC-TGGCTGGAAGTTG-GG 44602 Query 263343 CCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCAC 263402 |||||||| ||||||||||| ||||||| | | | ||||| |||| || ||||| Sbjct 44603 TCTCAAGACGGGCATGTACTACTTGCGCACGCAGGCTGCTGCTGCACCCATCCAGTTCAC 44662 Query 263403 CGTCGATCAG 263412 ||| |||||| Sbjct 44663 CGTAGATCAG 44672 >seq13 Length=282089 Score = 102 bits (112), Expect = 1e-15 Identities = 203/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||| ||||| || ||||| ||||| ||| | || | Sbjct 96446 GATTTGGCAAATGTAC-AAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATAGATC 96504 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | ||| | | | ||| || ||||||||||||||| | |||||| Sbjct 96505 TGTCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCT 96564 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| | | || || ||| || || || ||||| || || ||| || | Sbjct 96565 CACACATTTTGGCATTCTTT-GCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAG 96623 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | ||||| || | || ||||| |||| || || || ||||||||| Sbjct 96624 CGTTTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATG 96683 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || || |||||||||||||| ||||| ||||||||||| | |||| ||||||| Sbjct 96684 ATGGAGAATATCCACTCTGAAACATACTCTCTCCTGATCGATAGCTACATCAAGGA 96739 Score = 87.8 bits (96), Expect = 3e-11 Identities = 153/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| || || | ||| ||| |||||||| | | |||| | |||||| || Sbjct 97113 ATCATCACCGACGCTGTTGGGATTGAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGCT 97172 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| | ||||||||||||| | || ||| || || |||||| ||||||||||| ||| Sbjct 97173 CTCCTAGGCATGAACGCCA-CACTGATGAAGCAATATATTGAA-TTTGTCGCCGATCGCT 97230 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | | | || || || | || ||| ||| || |||||||| ||| | ||| Sbjct 97231 TATTGGTTGCTCTTGG-TAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATG 97289 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||| || || | | |||||||| ||||| |||||| Sbjct 97290 GAGAACATTTCCTTGGGTGGCAAGACGAACTTCTTCGAG 97328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177708189437016