Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq64 203 4e-47 >seq64 Length=130623 Score = 203 bits (224), Expect = 4e-47 Identities = 965/1521 (63%), Gaps = 38/1521 (2%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| |||| || || | || |||||| || || ||||| || | | Sbjct 44314 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 44255 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || ||||||||||| | || || || || ||||| || || | || || Sbjct 44254 TCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 44195 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | || ||| || |||| | || || |||| | ||| ||||| | ||||| Sbjct 44194 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA 44135 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || |||||||| | ||| |||| ||||| || | || || || || | Sbjct 44134 GGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAG 44075 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 || || || |||| || || || || ||| | || | ||| ||| || Sbjct 44074 GTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAG 44015 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 || || ||||| |||| ||| ||||| || | || || || ||||| || | Sbjct 44014 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGC 43955 Query 69079 AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTA 69138 | | || ||| || || || | |||||||| |||| |||||| |||| ||||| | | Sbjct 43954 AGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATG 43895 Query 69139 TTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 || | || | ||| || ||| || |||| || | ||| || || || || || || Sbjct 43894 TT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTT 43836 Query 69198 TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATA-- 69255 ||||| || |||| | || || | || || | || || | || || ||| | Sbjct 43835 ACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTA 43776 Query 69256 ----ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATT 69311 || || | || || | ||| || | || ||||| || ||||||| || Sbjct 43775 GTCGACGAAGGCAGGAAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGG-- 43718 Query 69312 TGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 ||| || | || ||||| || || || || | || || ||||| || | Sbjct 43717 -GCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTT 43659 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 ||| || |||||| |||| ||||| |||||||| || ||||| || | || ||||| | Sbjct 43658 CTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGT 43599 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTA---ACG 69485 ||| || |||| || || | ||| | | ||| || |||||| ||| Sbjct 43598 CTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA---GTCTTGCGGCCACG 43542 Query 69486 CTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCC 69543 ||| ||||| || | ||| | |||| || || || || || | |||| || Sbjct 43541 GCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCATAGCAATCAGCC 43484 Query 69544 AATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA---ACTCGT 69600 | ||||| || || || |||||||| | | ||| ||| ||| ||| || || Sbjct 43483 AGGCCAGGGCACTCGTTGGGACACATGAGAGTCCA---ATCTCCATTCTTTTCGACGCGC 43427 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 ||||| || ||||| || ||||| ||||| | |||||||| | | | |||||||| Sbjct 43426 TTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCC 43367 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || || ||| | ||| ||||| || | | || | ||||| || || || Sbjct 43366 TTGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGG 43307 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | || ||||| || || || ||||| || | ||||||||||||||| Sbjct 43306 TAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTG 43247 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || |||| | ||||| ||||| || || || ||| ||||||| || || | ||| ||| Sbjct 43246 TTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCATTGGTGCCGGCAATGTAA 43187 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || | || || || | | || || || || ||||| || ||||| Sbjct 43186 GAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATC 43127 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | ||||| || | ||||| || ||||| || ||||| ||||| |||||| | Sbjct 43126 ATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGACT 43067 Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020 |||||||| ||||| ||| || || || || || || | |||||| || ||| Sbjct 43066 AGAAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCG 43007 Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATA----GCTGATTCTATATC 70076 || ||||| || || | || | ||| || || | | ||| | | | | || Sbjct 43006 TGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGT-TGTC 42948 Query 70077 CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTT 70136 | | ||| || | ||| || ||||| ||| ||||||||||| || || | || Sbjct 42947 TCCC---CAAATACCGACCGCAACGCGCATAGTCATGTGCTGAGGTCGCTCGACGATCTT 42891 Query 70137 ATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGA 70196 || | ||| | || |||||| | || ||||| ||||| ||||| || | || Sbjct 42890 GCCGTTGAGTTTGAGAAGATATGATCTCTCTAGAGTCTTAAAGCCAAAGTATTGATAGTT 42831 Query 70197 AAAGTCTCTTTCGTAAATAAT 70217 |||||||| ||||| | ||| Sbjct 42830 GAAGTCTCTGTCGTAGACAAT 42810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686899629767520