Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 3e-15 >seq13 Length=282089 Score = 98.7 bits (108), Expect = 3e-15 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 |||||||| | |||| | || ||||| |||| || || || | || || ||||| Sbjct 96896 CAGCTTCGCCCAGCGCTTGGTGGCTTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGTGC 96955 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 |||| ||||| || |||||| | || |||||||| || |||| ||| || ||||| || Sbjct 96956 CTTT-GCCTCGATATTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTA 97014 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 | ||||| ||| ||| || ||||||||||| ||||| || ||||| Sbjct 97015 ATGAACTTATCTCTCGTGATGAGGGTTTGCACACAGACTTTGCATGTCT 97063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588314265607260