Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq64 302 6e-77 seq13 84.2 3e-11 >seq64 Length=130623 Score = 302 bits (334), Expect = 6e-77 Identities = 1170/1806 (65%), Gaps = 47/1806 (3%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTT 110427 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 44623 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 44565 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGC 110485 | ||| || ||| | |||| || ||| | ||| |||| |||| || ||| Sbjct 44564 GCCCATAGTAGGATCCTTCATGTGGACGTTGAGCGACTGGGACT--GGTCGATAAAGGCA 44507 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 || || | || ||||| | || |||| | ||| |||||||| || ||| Sbjct 44506 CCGCGATCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAG 44447 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 ||| |||||| || | || |||| | ||| ||||| |||||||| | | | Sbjct 44446 AGAGCCTTGATGTCGGCGGGTATATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATG 44387 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 ||| | | |||||| | | ||||||||||| || | ||| || |||| ||| Sbjct 44386 ATGCGGTTCTTCATGGCATCAGACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAG 44327 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 |||||| | || ||||| || | | | | | |||| ||||| | |||||| Sbjct 44326 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 44267 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || |||||||| ||||| ||||||| ||||| | ||||||||| || ||||| || || Sbjct 44266 GGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCG 44207 Query 110786 ATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGT 110843 | || || || ||| |||| ||| | ||||||||| | ||||| ||| ||||| | Sbjct 44206 AGCAGCAACGA--GTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACT 44149 Query 110844 CGTAGT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGC 110901 | | | || || || || |||| ||||||| || ||||| | |||| || || Sbjct 44148 CCCACAACTCAGAA-GGCTTGACATTCC-ACATGTCGAATTGAAGAATACCTTCCGAGGC 44091 Query 110902 GGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTC 110961 |||||| |||| ||||| |||| ||||| ||| |||| ||| || | || Sbjct 44090 GGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTG 44032 Query 110962 -CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 111020 ||||| ||||| || ||||| || ||||| | || | ||| ||| || | Sbjct 44031 TCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAG 43972 Query 111021 AATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 | || || | ||| || | || ||| | || || ||||| |||||||| | ||| Sbjct 43971 ACTCGAAGGGCATGCG-CAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCG 43913 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 111139 || |||| |||||||| || || || || ||||| ||| ||| || ||| Sbjct 43912 ATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCA 43853 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| ||| || || | || | | |||| || || || || | | || Sbjct 43852 ATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCG 43793 Query 111200 AAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 | || ||| | | | ||| | |||||||| | || ||||| |||||||| Sbjct 43792 TAGCGGCCT-TCTTTGTAGTCGACGAAGGCAGGAAGGGCAAGAGAGGCCAAGTTGCAAAC 43734 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318 ||| |||||| | |||||| | || || || || | |||||| || ||| Sbjct 43733 AGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAAT 43674 Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || |||| ||||| ||||| ||||| ||||||| ||||||||||| ||||| |||| Sbjct 43673 GGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGG 43614 Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAA 111437 | ||||| || ||||| || | ||| || | | ||| | | || | ||| | || Sbjct 43613 GTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTG-GGCACG---AA 43558 Query 111438 TGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | | || |||| || ||||| ||| ||||| |||||| || ||||||||||| Sbjct 43557 TAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTC-G 43499 Query 111495 CCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 ||| || || | || || || || || ||||| | |||| ||| | ||| Sbjct 43498 CCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCCATTC 43439 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACAC 111613 | || || ||||||||||| || ||||| |||||||| | |||||||| | | Sbjct 43438 TTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCA 43379 Query 111614 CGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGC 111673 || ||||| | || ||||| ||| || ||||| || || | | || |||||| Sbjct 43378 CGGTTTTCTTCCTTGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGC 43319 Query 111674 CATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTGATTTAC 111726 || ||||| || ||| | ||| || || ||| | | ||||| || | || Sbjct 43318 CAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCC----TGGTCAAC 43263 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 || | || ||| ||| || || |||||||| ||||| || || | ||| |||||| Sbjct 43262 GTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCATT 43203 Query 111787 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 || || ||| ||| | || | | |||| || || || ||||| || Sbjct 43202 GGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACC 43143 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 |||| ||| ||||| ||||| | | ||||| | |||||||||| || ||| Sbjct 43142 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTC 43083 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 ||||| || ||| || || ||| |||| ||| | || ||||| || ||||| Sbjct 43082 ATCCTTCATGTCGACTAGAAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTTGAA 43023 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAG 112024 ||| || |||| ||||| ||| | | |||| |||||| || ||| |||||||| Sbjct 43022 GAGTGTAGGTGAGGCGTGGGTGA--AGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAA 42965 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || ||||||| || || || |||| || || ||||| ||||| ||| || Sbjct 42964 ACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAGTCATGTGCTGAGGT 42905 Query 112085 GTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACC 112143 || | || |||| | ||| ||||||| | || |||| || || || | || Sbjct 42904 CGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCTAGAGTCTTAAAGCC 42846 Query 112144 AAAGTA 112149 |||||| Sbjct 42845 AAAGTA 42840 >seq13 Length=282089 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||||||||| || || ||||||||||| |||||| || || Sbjct 97057 GCAAAGTCTGTGTGCAAACCCTCATCACGAGAGATAAGTTCATTAGAGAAGGTGAGGCCG 96998 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| ||||| |||||||| | ||| | || | | || | ||| ||||||||| Sbjct 96997 GGCATCAGACCACGCTTCTTGAGCCAGAATATCGAGGCAAAGGCACCGCTGAAGAAGATG 96938 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 |||||||| || || || | | ||| | ||||||| Sbjct 96937 CCCTCCACGGCAGCGAAAGCCACCAAGCGCTGGGCGAAG 96899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628023615772800