Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq64 333 3e-86 seq82 98.7 1e-15 >seq64 Length=130623 Score = 333 bits (368), Expect = 3e-86 Identities = 1146/1771 (65%), Gaps = 31/1771 (2%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 44661 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 44602 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 44601 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 44542 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||| | ||||| || ||||| ||| || ||||| || ||||| | || | Sbjct 44541 GGACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAA 44482 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 ||| | || ||||| || ||| ||||||| ||| || || | || |||| Sbjct 44481 CATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGTATAT 44422 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 118101 ||| || || ||||| ||| || | | |||| | | |||||| | | | Sbjct 44421 TGGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAG 44365 Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161 |||||||||| || | |||||||| | ||| ||||| || || |||| Sbjct 44364 ACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 44305 Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221 | || | | || | | | || || |||| ||||||||||||||||||||||||||||| Sbjct 44304 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 44245 Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281 ||| ||||| | |||||||| ||||||||||| || | || | ||| || | || Sbjct 44244 CCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 44185 Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 118339 | | ||| | || | ||||| ||| |||||| || | | || | || | Sbjct 44184 CGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 44127 Query 118340 CTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 118399 | |||||| || || || || ||||||| || || || || |||| || || || Sbjct 44126 ATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 44067 Query 118400 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTTT 118458 ||||| | | | |||| || || | || ||||| ||||| || || || | Sbjct 44066 GGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCT 44008 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 118517 | || || | || | | ||||||| || || || | | || || | | Sbjct 44007 CGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCA 43949 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 43948 AGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 43889 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| ||| | ||| ||| || ||| || | | | || || || | | Sbjct 43888 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACG 43829 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GAC 118696 || || | |||| || || ||||| | | | || | | || ||| | | | ||| Sbjct 43828 ACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCGAC 43770 Query 118697 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 118756 | ||||||||| | || |||| || || |||| |||||| || ||| Sbjct 43769 GAAGGCAGGAAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTA 43710 Query 118757 CTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 118816 ||| || || |||||||||| ||| || || |||||| |||| |||||| || || Sbjct 43709 CTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCT 43650 Query 118817 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 118876 |||| |||| || ||||||||||| ||||| | || | ||||| || || ||||||| Sbjct 43649 CTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTC 43590 Query 118877 GAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCT 118935 ||| || | | ||||| | || | || | | ||| | | | || ||||| || Sbjct 43589 GAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT 43531 Query 118936 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 118995 | ||||| |||||| || |||||||| || || | || | || || || || Sbjct 43530 CATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACT 43471 Query 118996 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 119055 | || || | ||||| ||| | ||| || || || |||||||||||||| |||| Sbjct 43470 CGTTGGGACACATGAGAGTCCAATCTCCATTCTTTTCGACGCGCTTCATGAAGAGATCTG 43411 Query 119056 GGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 119115 ||||||| || || ||||||||| ||| || |||||| | || || || | Sbjct 43410 GGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCTTGCCATGGTTCTTTC 43351 Query 119116 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 119175 |||| || | |||||| | | || |||||||| || || ||||| | || | || | Sbjct 43350 GCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCAC 43291 Query 119176 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAA 119229 | | | || || |||||| || || || |||||| ||| || ||||||| Sbjct 43290 C---AGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACACGAA 43234 Query 119230 GCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTC 119289 |||| |||||||| || | |||| ||||| || || ||| ||| | || | Sbjct 43233 GCATGGGAATGATGCCGTTGGATGTACCATTGGTGCCGGCAATGTAAGAGCCGGTAGCAC 43174 Query 119290 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 119349 || ||||| || || || ||||| || ||| ||| ||||| || || | Sbjct 43173 GGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT 43114 Query 119350 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 119409 ||||| || ||||||| || || || |||| |||| | ||| || || || | Sbjct 43113 TGAGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGACTAGAAAACAAGAAG 43054 Query 119410 ACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC 119469 ||| ||| ||| ||||| ||||||||||| || |||| |||||| ||| | | Sbjct 43053 ACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGAG 42996 Query 119470 CTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACC 119527 |||| |||||| || |||||||||||| ||| ||||| || || |||||| Sbjct 42995 CTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTCCCCAAATACC 42936 Query 119528 GATCGAGACCCGCATAAACATGTATTGGGGT 119558 || || || |||||| ||||| || ||| Sbjct 42935 GACCGCAACGCGCATAGTCATGTGCTGAGGT 42905 >seq82 Length=114185 Score = 98.7 bits (108), Expect = 1e-15 Identities = 225/333 (68%), Gaps = 12/333 (4%) Strand=Plus/Minus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG----TTGATTTTCACGGGCAA 14291 ||| | ||| || | ||| |||||||||| ||| | || ||| ||| |||| Sbjct 53396 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAGGGCGACTTGGCTTT----GGCAG 53341 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | |||| ||||| |||| ||||||||| ||||| ||||| || || | || || Sbjct 53340 CACTGAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 53282 Query 14352 CGGCGGAACAT-TGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410 | | | |||| | || |||||| ||| || |||||| || | |||||| || || || Sbjct 53281 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 53222 Query 14411 GTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACCACT 14469 ||||||||||| ||||| ||| | ||||| |||| | |||| | | ||||||| Sbjct 53221 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACCCAA 53163 Query 14470 GCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGC 14529 | | || || |||||| | || || || || || | ||||| | || ||||| || Sbjct 53162 GTCGGAGAAGTTTTCAGGGTTCTTGAGAAACTCAACCACTTCTTGTAGCTCTTCCTTGGC 53103 Query 14530 GGCGTCGATGCCTTCAACGTCACTGAAGCGTGT 14562 | || || | ||||| ||||| || || Sbjct 53102 CTCATCACAACCGTGCACGTCGCTGAATCGGGT 53070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618426943890080