Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq64 282 5e-71 seq13 96.9 4e-15 >seq64 Length=130623 Score = 282 bits (312), Expect = 5e-71 Identities = 1118/1738 (64%), Gaps = 41/1738 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| |||||||| || |||||||| || || ||||||| || Sbjct 42906 CCTCAGCACATGACTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAGCGCGTT 42965 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 |||||||| ||| || |||||| |||| | | ||| ||||| |||| || |||| Sbjct 42966 TTGGAGACCTACCACCTCATGTCCAGCAAGCTCT--TCACCCACGCCTCACCTACACTCT 43023 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || | || |||| ||| || || ||| || ||||| | Sbjct 43024 TCAACGCCGGTACCCCCCAATGTCAGCTGTCTTCTTGTTTTCTAGTCGACATGAAGGATG 43083 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || |||||||||| | ||||| | | ||||| ||||| ||| ||||| Sbjct 43084 ACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTG 43143 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || || || |||| | | || | ||| ||| || || | Sbjct 43144 GTGGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCA 43203 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 ||||| ||| | || || ||||| |||||||| || || ||| ||| || | || | Sbjct 43204 ATGGTACATCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACG 43263 Query 104580 TAAATCAAGCTGGGCGTCGA-AAGGGATCTATCGCAGT------CTATCTTGAGCCATGG 104632 | | || ||||| | | ||| || || ||| | ||| || ||||| ||| Sbjct 43264 TTGACCA----GGGCGGCAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGG 43319 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||||| || | | || || ||||| ||||| ||||| || | || || || Sbjct 43320 CACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCATGGCAAGGAAGAAAACCG- 43378 Query 104693 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| |||||||||||| ||||| ||||| |||||||||||||||||| | || || | Sbjct 43379 TGCTCGCGATCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAA 43438 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || ||| ||||| ||||| | ||||| || || ||||| || | ||| | || Sbjct 43439 GAATGGAGATTGGACTCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGG 43498 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACGG 104870 ||||||||||| || || ||| ||||| ||| || || || ||| | ||| Sbjct 43499 CGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGACTA 43557 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | | || | || | | ||| | | || ||| |||| || ||||| || || | || Sbjct 43558 TTCGTGC-CCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGGGCAACCCC 43616 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | ||||| ||||| || ||||| ||| |||||| || || ||||| |||| || Sbjct 43617 TTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACCATT 43676 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || ||||| || || || || ||| | || | | | |||||| ||||| Sbjct 43677 CGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTT 43736 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATTTGA 105108 || ||| | || || | || || || | || || | | | | || | | | || Sbjct 43737 TGCAACTTGGCCTCTCTTGCCCTTCCTGCCTTCGTCGA-CTACAAAGAAGGCCGCTACGA 43795 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | | || |||||||| || || || ||| | ||||| |||| | ||||| Sbjct 43796 CTTCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATTGA 43855 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | || ||||||| ||||| ||||| || || ||| |||| || || || || Sbjct 43856 TGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGG 43915 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | | |||||||||||||| || || | | ||| | || || ||| | || || || Sbjct 43916 TGTTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTG-CGCATGCCCTTCGAGTCTC 43974 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||| || || |||| || || || |||||||| || ||||| || || | Sbjct 43975 CCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCCCTGACAG 44034 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 | | ||| |||| | | | || || || ||||| |||| ||||| || | Sbjct 44035 CCTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCT 44094 Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACTACG 105461 | |||| | |||||||| || |||| |||| || |||| |||| | | Sbjct 44095 CGGAAGGTATTCTTCAATTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTGTGGG 44148 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||||| ||| ||||| | ||||||||| | ||| |||| ||| | || | | Sbjct 44149 AGTGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAACTCGTTGCTGCTCG 44208 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || ||||||||| | ||||| ||||||| ||||| |||||||| || | Sbjct 44209 CTCCCATGCCCACCGCCTCCACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGCCAT 44268 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 ||||| | ||||| || | | | | | | || || || || | | |||||| Sbjct 44269 ACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACCCCT 44328 Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 105701 ||| | | || ||| || || ||||||||||| | | |||||| | | ||| Sbjct 44329 GGCTCCTCAAGGATCTCGTCGATATGGGTCTCTGGTCTGATGCCATGAAGAACCGCATCA 44388 Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761 | | | ||||||||||| || || |||| || || || ||| | | Sbjct 44389 TTGCCGAGAACGGTTCCATTCAGAACATCCCCAATATACCCGCCGACATCAAGGCTCTCT 44448 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || || |||||||| || | |||| || | |||||||| ||||| ||| Sbjct 44449 ACAAGACCGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCGGTG 44508 Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879 ||| || || | |||| ||| | || || |||| | ||| || ||| ||| Sbjct 44509 CCTTTATCGACC--AGTCCCAGTCGCTCAACGTCCACATGAAGGATCCTACTATGGGCAA 44566 Query 105880 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 | || | ||||||||| | | |||||| ||||||||| ||||| ||||| ||| Sbjct 44567 GATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTAC 44624 >seq13 Length=282089 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||| ||| |||| | | || | |||||||||||||| ||| Sbjct 96930 GTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATATTCTGGCTCAAGAAGCGTGGT 96989 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 94947 || ||||| || ||| |||||| || || |||||||||||||| ||||| | ||| | Sbjct 96990 CTGATGCCCGGCCTCACCTTCTCTAATGAACTTATCTCTCGTGATGAGGGTTTGCACACA 97049 Query 94948 GAGTTTGC 94955 || ||||| Sbjct 97050 GACTTTGC 97057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253013468320