Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq199 163 9e-35 seq1 143 8e-29 seq32 98.7 3e-15 seq21 98.7 3e-15 seq11 86.0 2e-11 >seq199 Length=55906 Score = 163 bits (180), Expect = 9e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | ||| | ||||||||| || |||||||| | Sbjct 32600 TTTGCATACCACCTCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGT 32659 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || ||||| ||||| || || || || || |||||||| || || ||||| | Sbjct 32660 AGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGGT 32719 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| ||||| ||||| ||||| |||| ||||||||||| |||| ||| || | Sbjct 32720 CAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAG 32779 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| | ||| | || || || || | || || || || |||||||| Sbjct 32780 ATTCGACTTCCAATGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | ||||| || || || || ||||| || || ||||| | Sbjct 33129 TTTGCATACCACCTCGAAGGCGGAGAACGAGGTGTAGTGTTGACTCCTTCTGGATATTGT 33188 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || ||||| || || || |||||||| ||||||||||| ||||| | Sbjct 33189 AGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGT 33248 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || ||||| || || |||||||| || | || ||||| ||||| | ||||| | Sbjct 33249 CGGGCGGGATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGAGG 33308 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| ||||| || || || || || || ||||| Sbjct 33309 ACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 33363 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || |||||||| || || || |||||||| || || Sbjct 32832 CATACCACCACGGAGGCGGAGGACGAGGTGAAGAGTGGATTCCTTCTGAATATTGTAGTC 32891 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || || || ||||| || || | || ||||||||||| Sbjct 32892 GGAGAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGG 32951 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| || |||||||| || | || ||||| || || | || || | || Sbjct 32952 AGGGATACCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTC 33011 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 || ||||| || | ||||||||||| | || || |||| Sbjct 33012 GACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACAA 33052 >seq1 Length=575545 Score = 143 bits (158), Expect = 8e-29 Identities = 454/703 (65%), Gaps = 3/703 (0%) Strand=Plus/Plus Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024 ||||||| || | ||||| || |||||||| ||||| || | || ||| | | |||| Sbjct 94497 TGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCTCAAA 94556 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084 | | ||||| ||||||||||| || || | ||||||| | ||||||| || | Sbjct 94557 CTACGATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGG 94616 Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144 | || || ||||| | ||| ||||||||| | | || || | || || || | Sbjct 94617 CCCGTTTCGAAGAGCTTTGTCAGGATCTTTTCCGCTCCACCATCCAGCCCGTCGACCGTG 94676 Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 | | | || || || || |||| ||| || |||| | || || |||||||||| Sbjct 94677 TTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGTGGTT 94736 Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT 350264 | || || ||||| | | || | | | || || | || || |||||||| || Sbjct 94737 CCACCCGAATTCCCCGAATCCAGAAACTCATCTCCGACTACTTCAACGGCAAAGAGCCCA 94796 Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTT 350324 | || || || || ||||| |||||||| || ||||| ||||| ||||| |||| Sbjct 94797 ACAAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTGCTATCC 94856 Query 350325 TATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCAC 350381 | ||||| | | ||| || | |||| | || || || || || |||| Sbjct 94857 TGTCTGGTGACACTTCTTCCAAGTCTACCAATGAAATCTTGCTGCTTGACGTCGCTCCTT 94916 Query 350382 TTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTA 350441 | || || || | || || | |||| | | ||||| || ||||| | || | | Sbjct 94917 TGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCCCGCAACACAA 94976 Query 350442 CTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAA 350501 | | || || || ||||| | ||| || || ||| | || || ||||| | ||| Sbjct 94977 CCATTCCAACCAAGAAGTCGGAGGTTTTCTCGACCTTTTCTGACAACCAGCCTGGGGTGC 95036 Query 350502 CAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAAT 350561 ||||| || ||||| || || || ||||| || || || || | || | | Sbjct 95037 TCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTCATGGGCAAGT 95096 Query 350562 TTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCG 350621 || || | || ||||| || || | || ||||||||||| ||||| | || | Sbjct 95097 TTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATCGAAGTTACCTTTG 95156 Query 350622 ATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 || | ||| | |||||||| | ||||| | || |||||||| Sbjct 95157 ATCTCGATGCCAATGGTATCATGAATGTCTCTGCTGTTGAAAA 95199 >seq32 Length=184707 Score = 98.7 bits (108), Expect = 3e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || ||||| || || || || ||||||||||| || |||||||| || || ||||| Sbjct 81276 GTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATG 81217 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || ||||| || || | || || || || || | || || | || || ||| Sbjct 81216 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCA 81157 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | ||||| || || || ||||| || ||||||||||| Sbjct 81156 AGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 81113 >seq21 Length=215256 Score = 98.7 bits (108), Expect = 3e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 ||||| ||||| ||||| || || ||||| | ||| || | |||||||||||| |||||| Sbjct 8427 ACACCGGCAAAATGGAACGTGTTCAGAGTCATTTGCGTGGCGGGCTCACCAATAGACTGC 8486 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590 ||||| | |||||| |||||||| ||||| |||||| Sbjct 8487 GCTGCCAGAACGCCGACCATTTCACCAGGGCTGACAA 8523 >seq11 Length=285515 Score = 86.0 bits (94), Expect = 2e-11 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG-CAGC 349675 |||||||||| ||||| ||||||||||| |||||| || || |||||||| ||| Sbjct 19126 TTACTGTACCTGCCTACTTTAATGATGCTCAGCGTCAGAGCACCAAGGATGCTGGTCAG- 19184 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | |||||||| | | | || || ||||||||||| || |||| ||| Sbjct 19185 ATCGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTAT 19244 Query 349736 GGGCTTGATAA 349746 || |||||||| Sbjct 19245 GGTCTTGATAA 19255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515233665637604