Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq64 488 6e-133 >seq64 Length=130623 Score = 488 bits (540), Expect = 6e-133 Identities = 1153/1725 (67%), Gaps = 41/1725 (2%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || ||||| |||||||||||||||||||||||| |||||| || | ||||||| Sbjct 44632 GTGCGCAAGTAGTACATGCCCGTCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAG 44573 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| | | || | || |||| || |||||||||||||||||||||||| Sbjct 44572 GTGATCTTGCCCATAGTAGGATCCTTCATGTGGACGTTGAGCGACTGGGACTGGTCGATA 44513 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACC-GACTTTTGCGGAATCTCCCAGATGGT 78368 | |||||||| ||||| ||||| | ||| || ||| | | | ||||||||| | ||| Sbjct 44512 AAGGCACCGCGATCGGCGGCCATCTGGATAACATGACGCT-GAGAAATCTCCCAAACGGT 44454 Query 78369 CCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGC--TCCCACCGG-C 78425 | ||| | ||||| | || | | || | | | ||| | | |||| | Sbjct 44453 CTTGTAGAGAGCCTTGATGTCGGCGGGTATATT--GGGGATGTTCTGAATGGAACCGTTC 44396 Query 78426 TCGCACAAT--TTCA-TTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCG 78482 ||| |||| | | ||||| || | |||| || || | |||||| Sbjct 44395 TCGG-CAATGATGCGGTTCTTCATGGCATCAGACCAGAGACCCATATCGACGAGATCCTT 44337 Query 78483 GACCAGGTGCCGGTTAATCATGAC---GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGAT 78539 || || ||| | | | ||| ||| || || |||| | |||||| |||| || Sbjct 44336 GA---GGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAAT 44280 Query 78540 GTTGGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGG 78598 ||||| |||||| ||||| ||||| ||| ||||| |||| || || | ||| ||||||| Sbjct 44279 GTTGGACGTGTATGGCTC-AAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGG 44221 Query 78599 TCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTA 78658 | |||||||| |||| ||| | || || |||| ||| ||| |||||||| |||| | Sbjct 44220 TGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCA 44161 Query 78659 GGCCGTCCCAA------AATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATAC 78712 | |||||| || ||| | | || ||||||||| |||||| |||| Sbjct 44160 GATTGTCCCACTCCCACAACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATAC 44101 Query 78713 CCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGC 78772 | || || || || || |||||||| || ||| | || | ||| ||||| || || Sbjct 44100 CTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAA 44041 Query 78773 ATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCG 78832 || | |||||| |||||||| | | ||||||||| |||||||||||| || | Sbjct 44040 GAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGG 43981 Query 78833 CCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGA-CATCGGCCAGGCCCTGGACG 78891 ||| || ||||| | | || || | || ||| | | ||||| || ||||| || Sbjct 43980 CCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCGGCAAGACCCTGAACA 43922 Query 78892 CCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAG 78951 || | | |||| ||||| || ||||||||||| || || ||| |||| | |||||| | Sbjct 43921 CCAACACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGG 43862 Query 78952 TTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTG 79011 || ||| |||| ||| |||||||| ||| || |||| ||||||| | || Sbjct 43861 TTGACATCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTC 43802 Query 79012 GCGAAATCAAAATGATTTCCTTT------GATGAAAGTCGGTAGGCACAGCGATGCCAGG 79065 ||| || | | | |||| || ||| | || ||| || || |||| | Sbjct 43801 TGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGGAAGGGCAAGAGAGGCCAAG 43742 Query 79066 TTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGA- 79124 ||||| || || ||| || ||| | | ||| ||||| || ||||||| || || Sbjct 43741 TTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAG 43682 Query 79125 ---CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTA 79181 ||| ||||| || | |||||||||||||||||| ||| ||||| |||||||| Sbjct 43681 CTGCGA----ATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTA 43626 Query 79182 GCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCG 79241 ||| | || | || || || ||| || ||| | | || ||||| | | | Sbjct 43625 CAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTG 43566 Query 79242 GGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAA 79301 ||| || | | ||| | || |||| | ||| || ||| | | | || Sbjct 43565 GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAA 43506 Query 79302 AGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTC 79361 |||| |||||| ||| | |||||| |||||||||| || ||||| || ||| || Sbjct 43505 CTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCAATC 43446 Query 79362 CTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTC 79421 | | ||| || || || ||||||||| || ||||||||||| || |||||| || Sbjct 43445 TCCATTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATC 43386 Query 79422 GCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTC 79481 ||| ||| | || || | ||| |||||| |||| || |||||||| | | ||| Sbjct 43385 GCGAGCACGGTTTTCTTCCTTGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTC 43326 Query 79482 GGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTT 79541 |||||||| ||||| || |||||||| || | ||| |||||| ||||||||||| Sbjct 43325 TGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTC 43266 Query 79542 GACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCC 79601 ||||| | ||| ||||||||||| || || |||||||| | |||||||| || || Sbjct 43265 AACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACC 43206 Query 79602 GTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCC 79661 || || ||| || | ||| | || || ||| | || | ||||| || Sbjct 43205 ATTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACC 43146 Query 79662 CCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGA 79721 || | | ||||||||| || || |||||| || |||||||| || || || Sbjct 43145 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCT 43086 Query 79722 GTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTT 79781 ||| |||||||| |||| || || || |||| ||| | | ||||||||||| Sbjct 43085 GTCATCCTTCATGTCGACTAGAAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTT 43026 Query 79782 GAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTT 79841 |||||| || || | ||||| ||||||| ||| | ||| || | ||| |||||| Sbjct 43025 GAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAA 42966 Query 79842 GACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 |||||| | || ||| || || |||||||| |||||||| Sbjct 42965 AACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCAT 42921 Score = 459 bits (508), Expect = 3e-124 Identities = 1163/1742 (67%), Gaps = 75/1742 (4%) Strand=Plus/Plus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| || |||||||| || || ||| || | ||| || ||||| ||| || Sbjct 42921 ATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAGCGCGTTTTGGAGACCTACCAC 42980 Query 19178 CTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAA 19236 || ||| |||| ||| ||||||| ||||| | || || || |||||||||||||| Sbjct 42981 CTCATGT-CCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAACGCCGGTACCCC 43039 Query 19237 CAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCAT 19296 | | ||| |||| ||||| ||||| | |||||||||||||||||||| || || Sbjct 43040 CCAATGTCAGCTGTCTTCTTGTTTTCTAGTCGACATGAAGGATGACAGCATTGACGGTAT 43099 Query 19297 CTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG---GA- 19352 |||||| || |||||| || || ||||||||| | | || |||||||| || Sbjct 43100 CTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAA 43159 Query 19353 --TCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGC 19410 ||||| || ||||| | | || | || || || || || | | Sbjct 43160 CGTCCACCGC------ATCCGTGCTACCGGCTCTTACATTGCCGGCACCAATGGTACATC 43213 Query 19411 CGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGG 19470 | |||| ||| | || ||||| || |||||||||||||| ||||| ||||| ||||||| Sbjct 43214 CAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTTGACCAGGG 43273 Query 19471 GGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCAT 19530 ||| ||| || || | || ||||||||||||||||| |||||||| ||||| | Sbjct 43274 CGGCAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCACGCAGACGTGTT 43333 Query 19531 GGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTT 19590 || || || || |||| |||||| || | || || | || |||||| ||||| Sbjct 43334 TGACTTTCTTGATTTGCGAAAGAACCATGGCAAGGAAGAAAACCGTGCTCGCGATCTCTT 43393 Query 19591 CACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCA 19650 | || ||||||| || || || |||||| || || || ||| | | ||| ||| Sbjct 43394 CCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGAATGGAGATTGGAC 43453 Query 19651 CCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGA 19710 || ||||| || |||| ||||||||||| | || ||| ||||||| ||| | | Sbjct 43454 TCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCGAGGAGTTTGAGGC 43513 Query 19711 GTTGTACCGGACTTACGTAGCCC-AGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACG 19769 | ||| || || | ||| ||||||| | ||| | || |||| | | Sbjct 43514 TCTCTACGAGAAGTATG-AGCGTGAGGGCCGTGGCCGCAAGACTATTCGTGCCCAGAAGC 43572 Query 19770 TCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGG 19829 ||||| || | ||||| | |||| ||| || |||| || | ||| ||||||| Sbjct 43573 TCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGGGCAACCCCTTTATGCTGTACAAGG 43632 Query 19830 ACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCG----TCCAAC 19885 | ||| ||| ||| || ||||||||| | || | || ||| |||||| Sbjct 43633 ATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACCAT----TCGCAGCTCCAAC 43688 Query 19886 CTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCG 19945 ||||| || || ||||| ||| | || || ||| ||| || || || |||| Sbjct 43689 CTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTTTGCAACTTGGCC 43748 Query 19946 TCCCTGTGCCTGCCGACTTTCGTC----------AAGGCCTCCTCCTTCGACTTTGCCAA 19995 || || ||| || | |||||| |||||| | | |||||| || Sbjct 43749 TCTCTTGCCCTTCCTGCCTTCGTCGACTACAAAGAAGGCCGC----TACGACTTCCAGAA 43804 Query 19996 ATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTT 20055 | ||||||| || | || ||| ||||| || || |||| ||| ||| Sbjct 43805 GCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATTGATGTCAACCA 43864 Query 20056 TTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGT 20115 |||||| | |||| ||| ||||| || ||||| || || || |||| | || || Sbjct 43865 TTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGGTGTTGGTGT 43924 Query 20116 CCAGGGCCTGGCCGACG-TTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGC 20174 ||||| || ||||||| ||||| || | || || | | ||||| |||| |||| | Sbjct 43925 TCAGGGTCTTGCCGACGCTTTTCTTGCT-CTGCGCATGCCCTTCGAGTCTCCCGAGGCCC 43983 Query 20175 GCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCG 20234 | |||||||||||| ||||||||| || | |||||||| ||||| | || | Sbjct 43984 GTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCCCTGACAGCCTCTCTTG 44043 Query 20235 AACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTA 20294 | || ||||||||| | ||||| ||| || |||||||| || ||||| || || |||| Sbjct 44044 AGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCGGAAGGTA 44103 Query 20295 TCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGA---GCGCC---CTCA 20348 | || || ||||||||| |||| |||||| ||| | | | || | Sbjct 44104 TTCTTCAATTCGACATGTGGAATGTCAAGCCTTCTGAGTTGTGGGAGTGGGACAATCTGA 44163 Query 20349 AGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCG 20408 ||| |||||||| ||||| |||||||||||||||| |||| |||||||| |||| Sbjct 44164 AGGAGCAGATCAAGGAGCACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCG 44223 Query 20409 CCTCGACCGCCCAGATCATGGGGAACAACGAG-GCTTTCGAGCCGTACACGACCAACATC 20467 |||| ||| | || || |||| ||||| ||| ||||| ||||| |||||| ||||||| Sbjct 44224 CCTCCACCTCGCAAATTCTGGGTAACAATGAGTGCTTT-GAGCCATACACGTCCAACATT 44282 Query 20468 TACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGG-TCCGCGA 20526 ||| ||| ||| |||| ||||| ||| || ||| ||| | ||||| ||| | | Sbjct 44283 TACCAGCGCCGTGTCTTGGCTGGTGAATTC--CA-GGTCGTCAA-CCCCTGGCTCCTCAA 44338 Query 20527 ----CTTGCAGAAGATCGATATGTGGTC----GCCCAAAATTAAGAA-TGAA--ATTGTC 20575 || | | | || | | | ||||| ||| || ||||| | | |||| | Sbjct 44339 GGATCTCGTCG-ATATGGGTCTCTGGTCTGATGCC----ATGAAGAACCGCATCATTG-C 44392 Query 20576 CGAGCCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTCAAGGACATTTAC 20632 |||| ||| | | ||| ||| |||| ||| || |||||| | ||| Sbjct 44393 CGAG--AACGGTTCCATTCAGAACATCCCCAATATACCCGCCGACATCAAGGCTCTCTAC 44450 Query 20633 AGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCC 20692 | |||||| ||||| || | ||| | ||| | ||||| ||||||||||| ||| Sbjct 44451 AAGACCGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCGGTGCC 44510 Query 20693 TACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTG 20752 | ||||||||||||||||||||||| ||| |||| || |||| | ||| ||| | Sbjct 44511 TTTATCGACCAGTCCCAGTCGCTCAACGTCCACATGAAGGATCCTACTATGGGCAAGATC 44570 Query 20753 AGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGG 20812 | ||| ||||| | |||||| | ||| |||||||||||||||||||| |||| Sbjct 44571 ACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTACTTGCGC 44630 Query 20813 AC 20814 || Sbjct 44631 AC 44632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548517477193920