Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq64 197 2e-45 seq13 89.7 6e-13 seq11 89.7 6e-13 >seq64 Length=130623 Score = 197 bits (218), Expect = 2e-45 Identities = 466/699 (67%), Gaps = 6/699 (1%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| || | ||| | ||| ||| || |||||| | || || || |||||| Sbjct 42969 GAGACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAAC 43028 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || ||||| || |||| |||| || || || || | |||||||||||| Sbjct 43029 GCCGGTACCCCCCAATGTCAGCTGTCTTCTTGTTTTCTAGTCGACATGAAGGATGACAGC 43088 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || ||||| |||||||| || |||||| |||||| ||||||||| | | |||||| Sbjct 43089 ATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGT 43148 Query 53423 ATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||||| | || || | || ||||||| | |||| | || || || || | Sbjct 43149 ATCGGCTTGAACG--TCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAATG 43206 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | || | || ||| | || ||||| || |||||||||||||| ||| | ||||| Sbjct 43207 GTACATCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTTG 43266 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| || ||||| || | || ||||||||||||||||| |||||||| | Sbjct 43267 ACCAGGGCGGCAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCACGCAG 43326 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGT 53659 || | | || ||||| || |||| ||| || || | ||||| | || ||| || Sbjct 43327 ACGTGTTTGACTTTCTTGATTTGCGAAAGAACCATGGCAAGGAAGAAAACCG-TGCTCGC 43385 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 || || || ||||||||||| || || ||||||||| | || || ||| | | Sbjct 43386 GATCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGAATGGA 43445 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 || ||| || ||||| || ||||||||||| ||||| | | ||| || |||||| Sbjct 43446 GATTGGACTCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCGAGGAG 43505 Query 53780 TTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 ||| | | | || || ||| | | ||||||| | |||| | || Sbjct 43506 TTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGCAAGACTATTCGTGCC 43565 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| | | |||||| || |||| || ||||| | || | ||| Sbjct 43566 CAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGGGCAACCCCTTTATGCTG 43625 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||||||||| | |||| |||||||||||||||||| Sbjct 43626 TACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAAC 43664 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | ||| ||| || ||||||||| | ||| | | || | ||| | Sbjct 44437 TCAAGGCTCTCTACAAGACCGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCG 44496 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | ||||| ||||| | ||||||||||||||||| || ||| || |||| || ||||| Sbjct 44497 CCGATCGCGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACGTCCACATGAAGGATCCTA 44556 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||| | | ||| ||||||||| || |||||| ||| ||||||||||| | Sbjct 44557 CTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCA 44616 Query 55908 TGTACTATCTGCGGAC 55923 ||||||| |||| || Sbjct 44617 TGTACTACTTGCGCAC 44632 >seq13 Length=282089 Score = 89.7 bits (98), Expect = 6e-13 Identities = 231/342 (68%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 130871 GTCGTCCACTTTGCAGCGCAGTCATTTGTGGATCTGAGTTTCGAGCAGTCGTTCCAGTTT 130930 ||| | || ||||| |||||||| |||||| ||||||| | | |||| | ||| Sbjct 271893 GTCTTGCATTTTGCTGCGCAGTCTCATGTGGACTTGAGTTTTGGAAACTCGTACAGTTTT 271952 Query 130931 ACACGGGACAATGTGCTCGGAACTCATGTCCTACTCGAGACGGTTCGCAATTATGGCAAG 130990 || | | ||||||| || || || || | || |||| || | ||| | || | Sbjct 271953 ACCCACGCCAATGTGTATGGGACGCACGTTTTGCTGGAGA--GTGC-CAAGAA-GGTTCG 272008 Query 130991 ATTCAG-CGTTTCGTGCACGTGAGCACGGACGAGGTGTACGGTGAGGT---TGATGGTCA 131046 | |||| || ||| | ||||| ||||| ||||||||||| || || || | | | Sbjct 272009 AATCAGACGCTTCATACACGTTTCTACGGATGAGGTGTACGGAGAAGTGAAGGAGGATGA 272068 Query 131047 CG-TGACGTGTGACGAGACGGCAGCA--TTAAACCCAATGAATCCCTACGCGGCAAGCAA 131103 || |||| || | ||| | ||| | || ||||| ||| || ||||| || ||||| Sbjct 272069 CGATGACTTG-GTCGAATC--CAGTATTTTGTCCCCAACGAACCCATACGCAGCGAGCAA 272125 Query 131104 AGCGGCTGCTGAGCTCTATGTCCGGGCGTACACCAAGTGCTACAACCTACCGTGCATCAT 131163 ||| || ||||| | ||||| | |||| |||| ||| ||| || || |||||| Sbjct 272126 AGCAGCGGCTGAAATGCTTGTCCAATCTTACAACAAGAGCTTCAAGCTTCCAACCATCAT 272185 Query 131164 TACACGCGGAAACAACGTGTTTGGGCCGAAGCAATACCCGGA 131205 | || | |||||||||| ||||||| | || || || || Sbjct 272186 TGTTCGAAGCAACAACGTGTATGGGCCGCACCAGTATCCCGA 272227 >seq11 Length=285515 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || |||||| | || || | || || ||||| |||||||| || || | || || Sbjct 148936 CGGGTGAAGGTATAACGAGGACTAGCAGCATCGGAACCACCTGCGAGACGGGAACCGAAG 148995 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || ||||| |||| |||| ||||||| || | |||||||| ||||| Sbjct 148996 TTACCGCTTGGCTCCAGGATATTGATATTGTTGGATCCAATAAAATTCTGTGCCAAGCCG 149055 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | |||||| ||||| || |||||||||||||| || |||||||| | || ||| Sbjct 149056 ATAATCGTCTGTTGCAGCGAGGCCTCACCGTGGTGATATGCAGTCTGCTCAGAGACGTAA 149115 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || || | | | | ||||| | ||| | ||| || ||| | || || || | Sbjct 149116 CCAGCGAGTTCCACAACCTTTTTATCCTTGACCAGATTTCGCTTAAAGCAAGCATAGAGA 149175 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 ||||| ||||| |||||||| ||||| | ||| || || |||||| || Sbjct 149176 ACCTTTCGCTGACCAGGTTTCAAGCCGTCAATGACGGACGGGATGGAACGCATG 149229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208694666400