Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq61 95.1 1e-14 >seq61 Length=132938 Score = 95.1 bits (104), Expect = 1e-14 Identities = 203/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 |||||||||||| | ||||| || || | ||||| || | |||||| | | Sbjct 112116 ACGTAGAATTGGGCAAATACATGGCAGGGCGGCAAGGCCATGAGGTGTAGATCCCGTGCG 112175 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847 |||||||| | ||| | ||||| | ||| | || || ||| | ||||||||||| Sbjct 112176 TTCCACGCACTCATGATGATCCGCCGGTCGTACGGCTTGTTCTTGATCTTGTCGATCACG 112235 Query 6848 TACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCG 6905 | | || |||||||| ||||| || | ||||||| ||| || | | |||||| | Sbjct 112236 T-CGGCGAGCTGGTCGATTCCCTTGCCGGTGTAGTCCGTCTTGGCATCGAC-ATACTCTG 112293 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965 | |||||||| | ||| ||||| ||||| || || || | ||||| | || || || Sbjct 112294 CGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCGAGATCGCCGACTTCACGGTGTG 112353 Query 6966 GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || ||| | ||||| || || || || || || | ||||||| || || || || Sbjct 112354 TGAGACCCAGATTGTCGAGGAACTCGCGTGATCCATTGCCGTCCCAAATTTTGACGCC 112411 Score = 95.1 bits (104), Expect = 1e-14 Identities = 203/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || || || || ||||||| | || || || || || || ||||| | ||| || || Sbjct 112411 GGCGTCAAAATTTGGGACGGCAATGGATCACGCGAGTTCCTCGACAATCTGGGTCTCACA 112352 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 || || | ||||| | || || || ||||| ||||| ||| | |||||||| || Sbjct 112351 CACCGTGAAGTCGGCGATCTCGGACCCGTGTACGGCTTCCAATGGCGGCACTTTGGCGCA 112292 Query 34442 GAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACG 34499 |||||| | | || ||| ||||||| | || ||||| |||||||| || | ||| Sbjct 112291 GAGTAT-GTCGATGCCAAGACGGACTACACCGGCAAGGGAATCGACCAGCTCGCCG-ACG 112234 Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559 ||||||||| | ||| || || | ||| | ||||| | ||| | ||||||||| Sbjct 112233 TGATCGACAAGATCAAGAACAAGCCGTACGACCGGCGGATCATCATGAGTGCGTGGAACG 112174 Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT 34617 | |||||| | || ||||| | || || ||||| | |||||||||||| Sbjct 112173 CACGGGATCTACACCTCATGGCCTTGCCGCCCTGCCATGTATTTGCCCAATTCTACGT 112116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448256415696960