Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq199 158 3e-33 seq32 154 3e-32 seq175 116 9e-21 seq64 98.7 2e-15 >seq199 Length=55906 Score = 158 bits (174), Expect = 3e-33 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||||||||| || || || || || || || | ||||| | |||||| Sbjct 32851 AGGACGAGGTGAAGAGTGGATTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCT 32910 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||| || | || || || |||||||| | |||||||||||| Sbjct 32911 TCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCC 32970 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| ||| || ||||| || ||||| ||| Sbjct 32971 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 33030 Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104 ||||| || | |||||| |||| Sbjct 33031 TTTCCGGTCAAAGTCTTGACAA 33052 Score = 147 bits (162), Expect = 5e-30 Identities = 173/234 (74%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| || || ||||| || ||||| || || || | ||| || Sbjct 33143 CGAAGGCGGAGAACGAGGTGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTG 33202 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || |||||||| || |||||||| || || || ||||| || || | ||| Sbjct 33203 CGGCCATCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGGGATTCCC 33262 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || || || || ||||||||| || ||||||||| Sbjct 33263 TCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGAGGACTCGACCTCGAGA 33322 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTACTT 211127 || || ||||| || ||||| ||||| || || | ||| |||||||||| Sbjct 33323 GTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGC-----ATGGTTACTT 33371 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || | |||| || || |||||||| || || || || | || ||| Sbjct 32395 AGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 32454 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || || ||||| ||||| ||||| ||||| | || ||||||||| Sbjct 32455 TCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 32514 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || || |||||||| ||||| ||| || || | ||| || ||| Sbjct 32515 TGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCCACTTCCAAAGTAATAGTC 32574 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | ||||| ||||| | ||||| Sbjct 32575 TTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 32606 >seq32 Length=184707 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||| ||| || |||||||| || || ||||| | ||||| Sbjct 81324 AGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 81265 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || |||||||| ||||| ||||| || |||| || ||||||||| Sbjct 81264 TCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 81205 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||||||| Sbjct 81204 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 81145 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| || || || || | |||||| || Sbjct 81144 TTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 81110 >seq175 Length=62467 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| || || | ||||| | || || || ||||||||||| |||||||| Sbjct 37697 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 37756 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || |||||||| |||| || |||||||| ||||| || || || || || Sbjct 37757 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCA 37816 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || ||||| ||||| ||||| |||||||| || || Sbjct 37817 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 37875 >seq64 Length=130623 Score = 98.7 bits (108), Expect = 2e-15 Identities = 186/270 (69%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145 |||| | |||||| ||||||||||||||| |||||| |||||| || ||||| Sbjct 43671 TTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGT 43612 Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205 | ||| || | || | | |||| ||| | ||| |||| |||||| || | ||||| Sbjct 43611 TGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAGTCT 43552 Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265 | | | || ||| ||| ||||| | |||||| |||| || ||| |||||| Sbjct 43551 TGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGC 43492 Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGT-CTTCCTTC 178324 |||| | || || || ||| ||||| || | |||| |||| | || | ||| ||| Sbjct 43491 AATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCCATTCTT--TTC 43434 Query 178325 -ACTCGTTTCATGAAGAGGTCAGAGGTCCA 178353 || || ||||||||||| || | | |||| Sbjct 43433 GACGCGCTTCATGAAGAGATCTGGGATCCA 43404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159136138453820