Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq199 150 4e-31 seq32 140 8e-28 seq175 122 2e-22 >seq199 Length=55906 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | || | ||| || || || || | |||||| |||| ||||||| Sbjct 32614 CGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTT 32673 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || ||||||||||| || ||||| ||||| || ||||| || ||||| ||| Sbjct 32674 CGGCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 32733 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| ||||| ||| ||| ||||| || || || | ||| || || || Sbjct 32734 TCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAAT 32793 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| |||||||| || | ||| | ||||| Sbjct 32794 GTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 Score = 149 bits (164), Expect = 1e-30 Identities = 161/212 (76%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| ||||||||||| || || | |||||| |||| | || | |||||| Sbjct 32851 AGGACGAGGTGAAGAGTGGATTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCT 32910 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| || | ||| || || || || || |||||||||||||| Sbjct 32911 TCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCC 32970 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||||||||| |||| || || || | ||||| ||| Sbjct 32971 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 33030 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| |||||| Sbjct 33031 TTTCCGGTCAAAGTCTTGA-CAACTGTTGCAT 33061 Score = 129 bits (142), Expect = 1e-24 Identities = 169/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || ||||| || || || || || |||| |||||| || | | ||| Sbjct 33143 CGAAGGCGGAGAACGAGGTGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTG 33202 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||||||||| || || || ||||||||||| || || Sbjct 33203 CGGCCATCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGGGATTCCC 33262 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||| ||| || || ||||| |||| || || || | Sbjct 33263 TCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGAGGACTCGACCTCGAGA 33322 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTTACTT 225726 || || |||||||| || | || || | ||| | |||| |||||||||| Sbjct 33323 GTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGC-----ATGGTTACTT 33371 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || | |||| ||| || |||| ||||| ||| || || | || ||| Sbjct 32395 AGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 32454 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || || ||||||||||| |||||||| || || || |||||||| Sbjct 32455 TCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 32514 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| |||||||| || || | |||||| || || || || ||| Sbjct 32515 TGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCCACTTCCAAAGTAATAGTC 32574 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || | |||||| Sbjct 32575 TTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 32606 >seq32 Length=184707 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| || ||| || || |||| ||||| ||| || || Sbjct 81334 ACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 81275 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| |||||||||||||| ||||| || ||||| || Sbjct 81274 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCC 81215 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| || | ||||| || | Sbjct 81214 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 81155 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| ||||| | ||||| | ||| | ||||| || Sbjct 81154 GGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 81110 >seq175 Length=62467 Score = 122 bits (134), Expect = 2e-22 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| |||| || |||| || || || |||||||| ||||||||||| | ||| || Sbjct 37706 TTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAATCGCTGC 37765 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || ||||| || |||||||||||||| || ||| ||| || || ||||| Sbjct 37766 TGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCAATCGTGTCC 37825 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||| || || || | ||||| ||||||||||||| ||| || | ||| Sbjct 37826 GAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 37875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192514881701192