Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq13 131 1e-25 >seq13 Length=282089 Score = 131 bits (144), Expect = 1e-25 Identities = 330/493 (67%), Gaps = 14/493 (3%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||||||| |||||||| || || ||||| | || ||||| || ||||| ||||| || Sbjct 97336 ACTCGCTTCTCGAAGAAGTTCGTCTTGCCACCCAAGGAAATGTTCTCCATGAAATCGAAG 97277 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || | | ||||| ||||| ||||| || | || || || || ||| Sbjct 97276 GGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGAGCAACCAATAAGCGATCGGCGACA 97217 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-ATCTCACAGGTAGCGC 4450 ||||| ||||| || |||| ||| | ||| || || | | | | ||| || || || Sbjct 97216 AATTCAATATATTGCTTCATCAGTGTGGCGTTCATGCCTAGGAGAGCACAC-GGCAGAGC 97158 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTAT-TTTAT 4509 | |||||||||||||| || || || || || ||||| ||||| | || || | Sbjct 97157 CTCGGTCAAAAACTCTTGCTCAATCCCAACAGCGTCGGTGATGATATCCTGGATAATTTT 97098 Query 4510 CTTTAGATGGTTTATTTACTAAGTATCCAA--ACAATAAACACGCAAAATCACAATGCAA 4567 ||| | ||| | | |||| || | | ||| | ||| ||||| || ||||| Sbjct 97097 CTT--GCTGGCTCGGTGCTTAAG-ATGCGAGTGCAACAGACATGCAAAGTCTGTGTGCAA 97041 Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 ||| || || | || ||||| ||||| || || | |||||||| | ||| | ||| Sbjct 97040 ACCCTCATCACGAGAGATAAGTTCATTAGAGAAGGTGAGGCCGGGCATCAGACCACGCTT 96981 Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 || ||||| ||||| | |||||| | || ||||| ||||| || ||||| || || Sbjct 96980 CTTGAGCCAGAATATCGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCCACGGCAGCGAA 96921 Query 4688 CGCTACTAATCGGGACCCGAACGAGCTGG---CTTTGTCTTTAATCCATTTTAATGCCCA 4744 || || || || ||| |||||| | ||||| | |||||| | ||||| Sbjct 96920 AGCCACCAAGCGCTGGGCGA---AGCTGGAATCCTTGTCCTGAATCCAACGAATGGCCCA 96864 Query 4745 GTTAGCTTTTTTC 4757 || ||||||||| Sbjct 96863 GTCTGCTTTTTTC 96851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044041415644