Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq64 203 5e-47 >seq64 Length=130623 Score = 203 bits (224), Expect = 5e-47 Identities = 962/1516 (63%), Gaps = 28/1516 (2%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || ||||| |||| ||| || | || |||||| || || ||||| || | | Sbjct 44314 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 44255 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 |||||||| |||| |||||| | || || || || ||||| || || | || || Sbjct 44254 TCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 44195 Query 75842 TTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 || | | ||| ||| || |||| | || || |||| | ||| ||||| | || | Sbjct 44194 TTGCGAATACC--GTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAG 44137 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTA 75958 | || |||| ||| | ||| |||| ||||| || || | || | || || || Sbjct 44136 AAGGCTTGACATTCCACATGTCGAATTGAAGAATACC-TTCCGAGGCGGGAGAGCCCTTG 44078 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 | || ||| | || | || || || || || | || | ||| ||| Sbjct 44077 AAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGG 44018 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 || || || ||||| |||| ||| || || || | || || || || || || Sbjct 44017 TAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATG 43958 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | | | || ||| || || || || |||||||| |||| ||| || |||| ||||| | Sbjct 43957 CGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGC 43898 Query 76139 TTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGA 76198 | ||| | ||| || ||| ||||||| || | ||| || || || ||||| Sbjct 43897 ATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGG 43838 Query 76199 TTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATC 76258 || | ||| || |||| | || || | || || | || || | || ||| | Sbjct 43837 TTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTG 43778 Query 76259 ------ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 || || | ||| || | ||| || | || ||||| || ||||||| || Sbjct 43777 TAGTCGACGAAGGCAGGAAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGG- 43719 Query 76313 TTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 |||| || | || ||||||||||| || || | || ||||| || || Sbjct 43718 --GGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTC 43661 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 | |||||||||||| |||| || | ||||| || || | ||| || | || ||||| Sbjct 43660 TTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCG 43601 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATC-- 76487 |||| || |||| || || | ||||| | ||| | | |||| ||| | Sbjct 43600 GTCTGGGACTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA--ATAGTCTTGCGGCCA 43544 Query 76488 -GCTTCTCTCTTTCATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 | ||| | ||||| || | ||| | | || ||||| || || || | |||| Sbjct 43543 CGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCATAGCAATCAG 43486 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 ||| ||||| || || || |||||||| | | ||| || |||| | | || || | Sbjct 43485 CCAGGCCAGGGCACTCGTTGGGACACATGAGAGTCCAATCTCCATTCTTTTCGACGCGCT 43426 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 |||| |||||||| || ||||| ||||||| || ||||| || | | |||||| | Sbjct 43425 TCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGATCGCGAGCACGGTTTTCTTCCT 43366 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 | || |||||| | ||| || || || | | || | ||||| || || || | Sbjct 43365 TGCCATGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGT 43306 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784 | || || | |||| ||||| || || || ||||| || | |||||||||||||| | Sbjct 43305 AGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGT 43246 Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844 | | || | | ||| ||||| |||||||| ||||||||||| || || | ||| ||| Sbjct 43245 TGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTACCATTGGTGCCGGCAATGTAAG 43186 Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904 || ||||| || | | ||| || || || ||||| || ||||| | Sbjct 43185 AGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCA 43126 Query 76905 GAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAA 76964 |||||| || | ||||| ||||| || || || || |||||| |||||| | | Sbjct 43125 TGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCATCCTTCATGTCGACTA 43066 Query 76965 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 ||||||| ||||| ||| || || || || || || | |||||| || || | Sbjct 43065 GAAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGT 43006 Query 77025 GAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATT 77084 | ||||| || || | || | ||| || || | ||| || || | | Sbjct 43005 GGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTC 42946 Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144 ||| || || || || ||||| ||| ||||||||||| || || |||| | Sbjct 42945 CCCAAATACCGACCGCAACGCGCATAGTCATGTGCTGAGGTCGCTCGACGATCTTGCCGT 42886 Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 77204 | | ||| | | |||||| | || | ||| ||||| ||||| || | || |||| Sbjct 42885 TGAGTTTGAGAAGATATGATCTCTCTAGAGTCTTAAAGCCAAAGTATTGATAGTTGAAGT 42826 Query 77205 CTCTTTCGTAAATAAT 77220 |||| ||||| | ||| Sbjct 42825 CTCTGTCGTAGACAAT 42810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712924882325760