Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq199 125 2e-23 seq32 87.8 4e-12 >seq199 Length=55906 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||||||||| || || || ||||| |||| ||||||| ||||| Sbjct 32623 AGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCC 32682 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||||| ||||| || | ||||||||| | | || |||||||| ||| Sbjct 32683 TCGAGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCT 32742 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | || ||| || ||||| | || |||||| Sbjct 32743 TGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAATGTGATAGTT 32802 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| ||||||| |||||| Sbjct 32803 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| | ||| || || ||||||||||| ||| | || | || ||| Sbjct 32395 AGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 32454 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| || ||||| | |||||||| | | ||| || ||||| | Sbjct 32455 TCCAGCTGCTTT--CCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGT 32512 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || ||||||| | || | | | || ||| || ||||| | |||||||| Sbjct 32513 CCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCCACTTCCAAAGTAATAG 32572 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | ||||| || || | ||||| Sbjct 32573 TCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 32606 >seq32 Length=184707 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| ||| | || | ||||| || || || || || || Sbjct 81304 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 81245 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 |||||| | |||||||||| | || || ||||| || || || || ||||| | Sbjct 81244 GATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 81185 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | |||| ||| ||| || ||||| || || || || |||||||| || || || Sbjct 81184 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGAC 81125 Query 152093 GAAGACCTGCATTTTACC 152110 ||| | |||||| || || Sbjct 81124 GAAAATCTGCATCTTGCC 81107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153805011404628