Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq32 183 6e-41 seq199 178 3e-39 seq175 134 3e-26 seq13 93.3 9e-14 >seq32 Length=184707 Score = 183 bits (202), Expect = 6e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || |||| || | ||||| || || |||||||||||||| Sbjct 81340 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 81281 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | ||||| ||||| || Sbjct 81280 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGG 81221 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 81220 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 81161 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | || || ||||| |||||||| || Sbjct 81160 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 81110 >seq199 Length=55906 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| || ||||| || |||||||| || |||||||||||||| Sbjct 32379 ACCACCACGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCT 32438 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || || || || |||||||| || | ||||| ||||| || Sbjct 32439 CAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 32498 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | ||| || | ||||| || || |||| ||| || Sbjct 32499 GATGCCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCCAC 32558 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||| || ||||| || ||||| ||||| || || || ||||| Sbjct 32559 TTCCAAAGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 32606 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || || |||| ||| || || || || || || |||||||| | Sbjct 32607 ACCACCTCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGA 32666 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||||||||| || || |||||||||||||| | || || |||||| || Sbjct 32667 CAAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGG 32726 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||| ||||| | ||||| ||||||| || ||||||| |||||| Sbjct 32727 AATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGAC 32786 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||| || || || ||||||||||| ||||| |||||||| Sbjct 32787 TTCCAATGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || |||| || || || ||||| |||||||||| Sbjct 33136 ACCACCTCGAAGGCGGAGAACGAGGTGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGA 33195 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || || || ||||| | ||| || ||||| ||| Sbjct 33196 AAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGG 33255 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || || | || |||||||| || | ||||| Sbjct 33256 GATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGAGGACTCGAC 33315 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || ||||| || || | ||||| ||||| || ||||| Sbjct 33316 CTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 33363 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| ||| || || || |||||||| | Sbjct 32835 ACCACCACGGAGGCGGAGGACGAGGTGAAGAGTGGATTCCTTCTGAATATTGTAGTCGGA 32894 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || || || || || || || ||||| || || || ||| || Sbjct 32895 GAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGG 32954 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| |||||||| || ||||| | || || | ||||| ||||| || | ||||| Sbjct 32955 GATACCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGAC 33014 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| ||||| || ||||||||||| || Sbjct 33015 CTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 33050 >seq175 Length=62467 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||| | || || || || ||||| || || || || || |||||| Sbjct 37697 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 37756 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || |||||| ||||| ||||||||||||||||| || | || || | || Sbjct 37757 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCA 37816 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || || ||||| ||||| ||||||| |||||| ||||| Sbjct 37817 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 37875 >seq13 Length=282089 Score = 93.3 bits (102), Expect = 9e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTG--CGACGCTATTCCTTGCC 230220 ||| |||| || | |||| | ||| | ||||| |||| ||| ||| | || || Sbjct 97113 ATCATCACCGACGCTGTTGGGATTGAGCAAGAGTT--TTTGACCGAGGCTCTGCCGTGTG 97170 Query 230221 GTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTA 230280 ||| | |||||||| || || ||| ||||||||| ||||| || || ||||| Sbjct 97171 CTCTCCTAGGCATGAACGCCACACTGATGAAGCAATATATTGAATTTGTCGCCGATCGCT 97230 Query 230281 TTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGG 230340 | || || || || || |||| || || || || || |||||||||| ||| |||| Sbjct 97231 TATTGGTTGCTCTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGG 97290 Query 230341 AGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA-A 230399 || |||||| | || || || ||||||||||| ||||| || | || ||||| | Sbjct 97291 AGAACATTTCCTTGGGTGGCAAGACGAACTTCTTCGAGAAGCGAGTTGGAGAATATCAGA 97350 Query 230400 AGGC 230403 |||| Sbjct 97351 AGGC 97354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046724876682472