Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq32 131 1e-25 seq199 120 2e-22 >seq32 Length=184707 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| || ||||||||||| ||||||||||| ||| Sbjct 81339 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 81280 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| || |||||||| | || ||||| || | || Sbjct 81279 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 81220 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| ||| | | | |||||||||| || |||||| Sbjct 81219 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 81160 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || |||||||| ||||||||||| || ||||| || ||||| Sbjct 81159 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 81113 >seq199 Length=55906 Score = 120 bits (132), Expect = 2e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| ||||| || || ||||| |||| ||| || | || ||| Sbjct 32854 ACGAGGTGAAGAGTGGATTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCC 32913 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || ||||| ||||||||||| | ||| | ||||||||| ||| Sbjct 32914 AGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGA 32973 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||||| ||| || ||||| | || || |||| Sbjct 32974 ATCTTCGACTTGACATTGT--CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCT 33031 Query 44307 TTCCCGTGAGGGTCTTCAC 44325 |||| || | ||||| || Sbjct 33032 TTCCGGTCAAAGTCTTGAC 33050 Score = 120 bits (132), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||| ||||| || | || ||| | || || Sbjct 33155 ACGAGGTGTAGTGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCG 33214 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||| || | || | || ||||| ||| Sbjct 33215 AGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCCTGA 33274 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | || ||||| | ||| || ||||| | ||||| |||| Sbjct 33275 ATCTTCGACTTGACATTGT--CAATAGTGTCAGAGGACTCGACCTCGAGAGTAATGGTCT 33332 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||||||||| ||||||||||||||| Sbjct 33333 TGCCGGTGAGGGTCTTGACGAAGATTTGCATG 33364 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || | ||||| ||||| ||||||||||| ||| || ||| |||| || Sbjct 32397 CACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 32456 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| |||||||| || | || ||||| || | ||| | || ||||| ||| Sbjct 32457 CAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTG 32516 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| || || ||| | ||||| || | |||||||| |||| ||||| ||| Sbjct 32517 AATCTTGGATTTGACATTGT--CGATGGTATCAGAAGATTCCACTTCCAAAGTAATAGTC 32574 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | |||||| || || |||||||| Sbjct 32575 TTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 32606 Score = 82.4 bits (90), Expect = 5e-11 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| ||| | || |||| || | || |||||| || || ||||| Sbjct 32601 TTGCATACCACCTCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTA 32660 Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| | ||| | || | || || |||||||||||||||||||| | |||||||| Sbjct 32661 GTCGGACAAAGTTCG-GC-CATCCTCGAGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGG 32718 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | |||||||| || ||||| ||| | | | || || || | Sbjct 32719 TCAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAA 32778 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||| || || || || || || | ||||| |||||||| ||||| Sbjct 32779 GATTCGACTTCCAATGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359985714274956