Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq32 159 8e-34 seq199 158 3e-33 >seq32 Length=184707 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || || ||||||||||| |||||||| || ||| Sbjct 81116 CAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 81175 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || || || |||||||||||| Sbjct 81176 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAA 81235 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 81236 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 81295 Query 178104 CAAAAAGA 178111 || || || Sbjct 81296 CAGAAGGA 81303 >seq199 Length=55906 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || || || |||||||| || ||| ||| Sbjct 33360 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCCTCTGAC 33301 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || |||||||| || |||||||| Sbjct 33300 ACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCGCCCGACCAGCAG 33241 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| |||||||| ||||| | |||||| | || || || || Sbjct 33240 CGTCTAATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAATATC 33181 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || |||||||| || || ||| Sbjct 33180 CAGAAGGAGTCAACACTACACCTCGTT 33154 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || ||||| || || || | || |||||| || || Sbjct 32603 CAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACTTTGGAAGTGGAATCTTCTGAT 32544 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| |||||||||||||| || || |||||||| ||||||||| Sbjct 32543 ACCATCGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAA 32484 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||| || |||||||| ||||| ||||| || | || || ||| || ||| || Sbjct 32483 CGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAACATC 32424 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||| || ||||||| || Sbjct 32423 CAGAAGGAAAGCACTTTGCATCTCGT 32398 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || ||| | || ||||| || |||||||| ||||| || ||| ||||||||||| Sbjct 33050 GTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGAC 32991 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || ||||| |||||||||||||| ||||| |||||||| || ||||| ||| | || Sbjct 32990 AATGTCAAGTCGAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAGCAGCGATTGATT 32931 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || ||||| |||||||| | || || |||| || || | || || ||| Sbjct 32930 TTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAATATTCAGAAGGAA 32871 Query 178113 TCAACACTGCATCTTGT 178129 || || || || || || Sbjct 32870 TCCACTCTTCACCTCGT 32854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203714728443192