Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq32 156 4e-33 seq175 120 3e-22 seq199 96.9 3e-15 >seq32 Length=184707 Score = 156 bits (172), Expect = 4e-33 Identities = 177/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || || | ||||| ||||| |||||||||||||| ||||| ||||| Sbjct 81343 ACCACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 81284 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | |||||||| | || ||||||||||| || || || || || || || ||||||| Sbjct 81283 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGG 81224 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 ||||| || |||||||||| ||| || ||| ||| | | | |||||| |||| Sbjct 81223 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACT 81165 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||| | || ||||| || ||||| || || || |||||||||||||| || Sbjct 81164 CCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 81110 >seq175 Length=62467 Score = 120 bits (132), Expect = 3e-22 Identities = 138/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| |||||||| ||||| || |||| || ||||||||||| ||||| | Sbjct 37695 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 37754 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| ||||| ||||| | ||||| || ||||||||| |||||| ||| || | Sbjct 37755 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTT-GACATTG 37813 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||| ||||| | || || || || |||||||| ||||| ||| Sbjct 37814 TCAATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACG 37873 Query 41852 AAA 41854 ||| Sbjct 37874 AAA 37876 >seq199 Length=55906 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || |||||||||||| || |||||||| Sbjct 32608 CCACCTCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 32667 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||||||||| ||||| || || || ||||| ||||| | |||| Sbjct 32668 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 32727 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||| | | ||| | || | ||| || || | || || || || Sbjct 32728 ATGCCTTCCTTAT-CTTGAATCTTAGACTTTACATTATCG--ATCGTATCCGAAGATTCG 32784 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || ||||| || |||| ||||| ||||| |||||||| Sbjct 32785 ACTTCCAATGTGATAGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 32834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| || || ||||| || || ||||| | || ||||||||||| || ||||| Sbjct 33172 CTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAA 33231 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| ||||| | || | | |||||||||| ||| | || | | || Sbjct 33232 GATTAGACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCC-TGAATCTTCGACTTGACAT 33290 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| ||||| ||||| | || || || || || || || ||||| | Sbjct 33291 TGTCAATAGTGTCAGAGGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGA 33350 Query 41850 CGAAAATCTGCATG 41863 |||| || |||||| Sbjct 33351 CGAAGATTTGCATG 33364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||||| || ||||||||| Sbjct 32836 CCACCACGGAGGCGGAGGACGAGGTGAAGAGTGGATTCCTTCTGAATATTGTAGTCGGAG 32895 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| || ||||| |||| ||||| || || | || Sbjct 32896 AGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGG 32955 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | ||||||||| ||| | || | ||| || | || | |||||| ||||| Sbjct 32956 ATACCTTCCTTGTCC-TGAATCTTCGACTTGACATTGTCG--ATGGTGTCGGAGGACTCG 33012 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 ||||| | || || || || || |||| ||||| || Sbjct 33013 ACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 33050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462297828241600