Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq31 100 6e-16
seq842 84.2 5e-11
>seq31
Length=45476
Score = 100 bits (110), Expect = 6e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 230428 GACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487
|| ||| |||| ||| || | ||||||||||| ||| ||| || || || |||
Sbjct 39891 GAGGCTCTTCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAATATATTGAA 39950
Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547
|| || ||||| ||| | || ||||| |||||| |||| || || ||||| | |||
Sbjct 39951 TTTGTCGCCGATCGCCTATTGGTTGCTCTTGGTAACGAAAAGGTATACAAAACCGCCAAC 40010
Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607
||||| | || ||||| |||||| | || ||||| ||||||||||| |||||
Sbjct 40011 CCCTTCGATTTCATGGAAAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCGA 40070
Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
|| | || ||||| | | |||| || |||
Sbjct 40071 GTTGGAGAATATCAAAAGGCTGGCGTCATG 40100
>seq842
Length=9876
Score = 84.2 bits (92), Expect = 5e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055
||| |||||| |||||| ||||| |||| |||||||| || ||| | ||||| ||
Sbjct 2992 GTCGTCACCGTTGGCATATCGCCACTGGAGGTACTGGTTCGGGGTCTTCTCAAGGTGCAT 2933
Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115
||| | ||| | | ||| ||||| | |||| | | |||| || |||||||||
Sbjct 2932 CTCCACGTGCTCCAGAGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTC 2873
Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175
|| | || |||||| ||| || ||||||| ||| ||||||||| || ||
Sbjct 2872 GACTTTGCCTGTGGTGGGGATGCTTTCACCGGTGAGCAACTTGATGAGGGTGGACTTGCC 2813
Query 319176 CGCACCGTT 319184
|||||||||
Sbjct 2812 CGCACCGTT 2804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057329803469690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |