Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq31 100 6e-16 seq842 84.2 5e-11 >seq31 Length=45476 Score = 100 bits (110), Expect = 6e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 230428 GACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487 || ||| |||| ||| || | ||||||||||| ||| ||| || || || ||| Sbjct 39891 GAGGCTCTTCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAATATATTGAA 39950 Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547 || || ||||| ||| | || ||||| |||||| |||| || || ||||| | ||| Sbjct 39951 TTTGTCGCCGATCGCCTATTGGTTGCTCTTGGTAACGAAAAGGTATACAAAACCGCCAAC 40010 Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607 ||||| | || ||||| |||||| | || ||||| ||||||||||| ||||| Sbjct 40011 CCCTTCGATTTCATGGAAAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCGA 40070 Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 || | || ||||| | | |||| || ||| Sbjct 40071 GTTGGAGAATATCAAAAGGCTGGCGTCATG 40100 >seq842 Length=9876 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||| |||||| |||||| ||||| |||| |||||||| || ||| | ||||| || Sbjct 2992 GTCGTCACCGTTGGCATATCGCCACTGGAGGTACTGGTTCGGGGTCTTCTCAAGGTGCAT 2933 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||| | ||| | | ||| ||||| | |||| | | |||| || ||||||||| Sbjct 2932 CTCCACGTGCTCCAGAGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTC 2873 Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175 || | || |||||| ||| || ||||||| ||| ||||||||| || || Sbjct 2872 GACTTTGCCTGTGGTGGGGATGCTTTCACCGGTGAGCAACTTGATGAGGGTGGACTTGCC 2813 Query 319176 CGCACCGTT 319184 ||||||||| Sbjct 2812 CGCACCGTT 2804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057329803469690