Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq31 114 1e-20 >seq31 Length=45476 Score = 114 bits (126), Expect = 1e-20 Identities = 285/426 (67%), Gaps = 10/426 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| || || ||||| ||||| || ||||| | | || || || | Sbjct 40086 TTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTTT 40027 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||||||||| || || || | | | ||| || || || || | | | || Sbjct 40026 CCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGAGCAACCAATA 39967 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | ||| || |||||||| |||||||| ||||| | | |||||| |||| ||| Sbjct 39966 GGCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGA- 39908 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || ||||||||| || |||||||| |||||| || |||| || || | |||||| Sbjct 39907 GCACACGGAAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAATA 39848 Query 16913 --CTAGC-AACTCG-TTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGC 16968 || | |||| | || || | ||||| || ||||| || |||||| || Sbjct 39847 TCCTGGATAACTTGCTTGCTGGCTCGGTGCTTG----AGATGCGAGTGCAACAGACAGGC 39792 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 || || || || ||||| || | | ||||||||||||||| || || | || || Sbjct 39791 AAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGACCTGG 39732 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||| || || ||||| | ||| || |||| ||| || | || ||||| || || Sbjct 39731 CATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATGCC 39672 Query 17089 CTCGAC 17094 ||| || Sbjct 39671 CTCCAC 39666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517309709184840