Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq39 134 2e-26 >seq39 Length=43498 Score = 134 bits (148), Expect = 2e-26 Identities = 253/366 (69%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 145866 CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCG 145924 || ||||||||| || ||| | | ||||||||||||| |||||| | | || ||| Sbjct 5262 CGACACGTAGAATTGCGCAAAT-ACATGGCAGGGCGGCAACGCCATGAGGTGTAGATCCC 5320 Query 145925 CCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTA 145984 | |||||| || | | || || || |||| | || || ||||||||| | | Sbjct 5321 GTGCGTTCCACGCACTCATGATGATCCGCCTGTCGTACGGCTTGTTCTTGATCTTGTCAA 5380 Query 145985 TCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACG 146044 ||| ||| ||||||||| || |||| || ||| |||||||||| || |||||| Sbjct 5381 TCACGTCGGCGAGCTGGTCGACTCCCTTGCCGGTGTAGTCTGTCTTGGCATCGACGTACT 5440 Query 146045 CGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGT 146104 | || || ||||||| ||| ||||| ||||| ||||| ||||| || || || | || Sbjct 5441 CTGCGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCCAGATCGCCTACTTCACGGT 5500 Query 146105 GCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGC 146164 | || || | ||||||| || ||||| || ||| ||||||| || ||||||| Sbjct 5501 GTGTGAGACCCAGATTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCATATTTTGACGC 5560 Query 146165 C--CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTC 146222 | | | || ||| || || | ||| ||| ||| ||||||||| || || || | Sbjct 5561 CGGCGTTGCTGAGGGC-CAGT-GAGGAGGTGTTGCCCTCGATGAACCATAGTAGTTCGGC 5618 Query 146223 GAGGAC 146228 || ||| Sbjct 5619 GATGAC 5624 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 145704 GTAGACGTGCGCGTCCCCCAGGACGTGGATGAAG-TCCCCGGGCTCGAGGCCCGTGAGGT 145762 ||||| ||||||||| |||| ||||||| ||| | | || ||| | | | | | | Sbjct 5019 GTAGATGTGCGCGTCGCCCATGACGTGGGTGAGGCTGCCGGGGACCAAATCGCACGCA-T 5077 Query 145763 GGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCA 145822 | || | ||||| || || || | |||||| || |||||||||||||| ||||| |||| Sbjct 5078 GTGCAATCATGTGTGTGAGGAGTGCGTAGCTAGCGATGTTGAAGGGCACGCCCAGGCCCA 5137 Query 145823 TGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 |||| | || || ||||||| || ||| Sbjct 5138 TGTCGCATGATCGTTGGTACAATTGACAG 5166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589807850370520